SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene319

Length: 979 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene319

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16567	1/7
SustainPine v2.0	sp_v2.0_unigene21469	6/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen_Ole_e_I multi-domain protein	-	-	1.0e-12	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYX9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 32 aas, putative chimeric sequence,

Fln protein: MVSKESVVRAILLGIVCTCSLASANYETLEKPISVVLKGRVVCDAHSWDEVDFSDSSDKISDAAVAVKCSHGLNRKTGADVVSMEGKTDANGEFKVELRRSIISSILLSYSADHNSTLKGYCSARLLSNPPEKCNVPFPVTSSSDLLTLKSDCHGIRTFTFPSLSYRSQSKLCSHSDVTCSAGHKSLPAGRDLHDLSKESSSGMDFSFPHTIFPPLPKPVFGFPPLNLPHPQPNPRLPPLHLPQPVLGFPPLHLPQPVLGFPPLHLPQPVLGFPPLPAGNPIPGPSLFG*

Protein Length: 291

Fln nts: ATGGGGAGCACTTGAAGTTGAAGTTGAGTTTCATC_-_ATGGTGTCGAAAGAGAGCGTTGTACGTGCAATTCTGCTGGGTATCGTCTGCACTTGCAGTTTAGCAAGTGCAAATTATGAAACCCTGGAGAAGCCGATATCTGTTGTGTTGAAGGGCAGAGTAGTTTGTGATGCACACAGCTGGGATGAAGTGGATTTTTCGGACAGCAGTGATAAAATATCAGATGCTGCAGTTGCTGTGAAGTGTAGCCACGGCCTCAACAGGAAAACTGGTGCAGACGTGGTTTCCATGGAAGGAAAAACAGATGCAAATGGAGAATTCAAAGTGGAGCTCCGTCGCTCCATTATATCATCAATTCTACTCTCCTACTCAGCTGATCACAATTCCACTCTCAAGGGTTACTGCTCAGCTCGGCTCCTCAGCAACCCCCCAGAGAAATGCAATGTGCCATTCCCTGTCACCTCGTCGTCGGACCTGCTGACCTTAAAATCAGACTGCCATGGAATCCGAACCTTCACATTTCCTTCATTATCCTATCGTTCGCAGAGTAAGTTGTGTTCTCACAGTGATGTCACCTGCTCGGCAGGTCATAAATCATTGCCAGCAGGCCGTGATTTGCATGACCTCAGCAAAGAATCATCAAGTGGCATGGATTTCTCATTTCCCCATACAATTTTTCCTCCTCTGCCAAAACCAGTGTTCGGTTTCCCTCCTCTTAATCTCCCTCATCCCCAACCAAATCCGAGGCTCCCTCCTCTGCATCTTCCTCAACCAGTGCTGGGGTTTCCTCCTCTGCATCTTCCTCAACCTGTGCTGGGGTTTCCTCCTCTGCATCTTCCTCAACCTGTGCTGGGGTTTCCTCCTCTCCCTGCAGGCAACCCCATTCCTGGCCCCAGCCTTTTCGGTTAG___CGTTCCCTCCTCAACTCCCACATATTCCATTAGGCTAATAATCTTTATAACCTATTCATAAATATTATACAAAT

Fln Alignment:

Contig319___MVSKESVVRAILLGIVCTCSLASANYETLEKPISVVLKGRVVCDAHSWDEVDFSDSSDKISDAAVAVKCSHGLNRKTGADVVSMEGKTDANGEFKVEXXXXXXXXXXXXYSA--DHNSTLKGYCSARLL-SNPPEKCNVPFPVXXXXXXXXXXXXCHGIRTFTFPSLSYRSQSKLCSHSDVTCSAGHKSLPAGRDLHDLSKESSSGMDFSFPHTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLGFPPLHLPQPV-----LGFPPLHLPQPV
A9NYX9________________MASKQNVVCAILLCIVYTCSSASANSGAQQKPISVVLKGRVVCHACSLDEENFSDAGYIISGAVVAVECRAGLNRKTNAGLVSIEGKTDKNGEFKVELPGSIISSILLCSSSSDDHNPTLKGYCSARLLSSSPQEKCNVPSSTTSSSDQLIFTSDGNGIRTFTFPSLSYHSGSKLCSHKDITISSDHESLQAGRALHEVGTGSSSDKDALFPH--------------------------GNLPPLPKSVLGFPPLDLPLPLPPHLFLNFPPLPLDLPL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
10	75		25		0.996473
11		75	25		0.996473
12			25	75	0.996473
13			25	75	0.996473
63	25		75		0.996473
249		66		33	0.997452
846	25			75	0.996473
852			25	75	0.996473
859			33	66	0.997452
880	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain