SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene275

Length: 410 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene275
TCAGGAATGCAGAACTTCTTAGGATTGAGCACGAACGGGAACATGGGCCCAACACCTGCAGAAGGAATCCGCAGACAAGTTTTTCCTGGGTTGTACTTAAATGAACGGCAACAACATGCATCCAATGCAAAATTGAATCCACTATCTGCGACAGCTGGGATGCCGTCAAGATCACACAGAAGAGGTGGTACCCTCCTTGGTGTAGACATGTTGGAGTTAAACTCATAGCAGCTTGTTGGCTTTATGGGACTTAAAGTTACTAGGAATCATTTTGGTTTGATTGTAATTTGCAGTGCAGCACAAGCTTTGTTGGCTGTCTGCATGAATAAGTTCGATTTTGACTGCATATAGTTGGTTTTTTCTGTGTTCATTGCTGCATGTTGTTTTTGCTTGGAGTGAAATTGTATGCT

Ace file of the UniGene biog2_v2.0_unigene275 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20767	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ANTH domain-containing protein n=1 Tax=Dictyostelium discoideum RepID=Q54Y50_DICDI	-	-	1.0e-08	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	anth domain-containing protein	-	-	0.0	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8V1

Fln msg: your sequence is shorter than subject: 76 - 294

Fln protein: SGMQNFLGLSTNGNMGPTPAEGIRRQVFPGLYLNERQQHASNAKLNPLSATAGMPSRSHRRGGTLLGVDMLELNS*

Protein Length: 77

Fln nts: TCAGGAATGCAGAACTTCTTAGGATTGAGCACGAACGGGAACATGGGCCCAACACCTGCAGAAGGAATCCGCAGACAAGTTTTTCCTGGGTTGTACTTAAATGAACGGCAACAACATGCATCCAATGCAAAATTGAATCCACTATCTGCGACAGCTGGGATGCCGTCAAGATCACACAGAAGAGGTGGTACCCTCCTTGGTGTAGACATGTTGGAGTTAAACTCATAG___CAGCTTGTTGGCTTTATGGGACTTAAAGTTACTAGGAATCATTTTGGTTTGATTGTAATTTGCAGTGCAGCACAAGCTTTGTTGGCTGTCTGCATGAATAAGTTCGATTTTGACTGCATATAGTTGGTTTTTTCTGTGTTCATTGCTGCATGTTGTTTTTGCTTGGAGTGAAATTGTATGCT

Fln Alignment:

Contig275___SGMQNFLGLSTNGNMGPTPAEGIRRQVFPGLYLNERQQHASNAKLNPLSATAGMPSRSHRRGGTLLGVDMLELNS
D5A8V1________________SGMQNFLGLSTNGNMGPTPAEGIRRQVFPGLYLNERPPHAANAKLNPLSATAGIQSRSHRRGGTLLGVDMLELNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain