SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene238

Length: 311 nt

UniGene Fasta

>biog2_v2.0_unigene238
GAACAGACGTCATAAACACAAGGGAAGAGAGAAGCAGGAAAAAGAGAGTAATGGTCCAGTGCAACTTTCAAAGTTCCTTGGGCGGGGATAAAGAAGATAATGTGAGACGCAGTGCGGTCTCTGGAAAAAAGATTCTTCTGAAGGTTGACAAAACGAAGGAAGACAAATTGGCCGAGAACAACAGGAGTGAGCTTTTGAAGTTCTTGAATGCCAGTTATGATTGATTTGGCTGATCTGGCCTCATTCTTCCGCAGTAGTGTGATCCACATAACTGGTGTGATTCGTGATTAGATCAATGTTTTTTGTGTGGG

Ace file of the UniGene biog2_v2.0_unigene238

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10136	2/3
SustainPine v2.0	sp_v2.0_unigene28103	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1777 multi-domain protein	-	-	4.0e-08	28%
FL-Next	tr=Uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	uncharacterized protein	-	-	8.04861e-17	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	8.04861e-17	89%

Source	KEGGs	Term	e value	Identity
Blast2go	Pentose and glucuronate interconversions	00040	8.04861e-17	89%
Blast2go	Starch and sucrose metabolism	00500	8.04861e-17	89%
Blast2go	Metabolic pathways	01100	8.04861e-17	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall modification	GO:0042545	Biological Process	8.04861e-17	89%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	8.04861e-17	89%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	8.04861e-17	89%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	8.04861e-17	89%
Blast2go	enzyme inhibitor activity	GO:0004857	Molecular Function	8.04861e-17	89%
Blast2go	cell wall	GO:0005618	Cellular Component	8.04861e-17	89%
Blast2go	plastid	GO:0009536	Cellular Component	8.04861e-17	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F4K5Q4

Fln msg: Overlapping hits, possible frame ERROR between 85 and 78, your sequence is shorter than subject: 75 - 177

Fln protein: NRRHKHKGREKQEKESNGPVQLSKFxxxxDKEDNVRRSAVSGKKILLKVDKTKEDKLAENNRSELLKFLNASYD*

Protein Length: 76

Fln nts: GAACAGACGTCATAAACACAAGGGAAGAGAGAAGCAGGAAAAAGAGAGTAATGGTCCAGTGCAACTTTCAAAGTTCxxxxxxxxxxxxGATAAAGAAGATAATGTGAGACGCAGTGCGGTCTCTGGAAAAAAGATTCTTCTGAAGGTTGACAAAACGAAGGAAGACAAATTGGCCGAGAACAACAGGAGTGAGCTTTTGAAGTTCTTGAATGCCAGTTATGATTGATTTGGCTGATCTGGCCTCATTCTTCCGCAGTAGTGTGATCCACATAACTGGTGTGATTCGTGATTAGATCAATGTTTTTTGTGTGGG

Fln Alignment:

Contig238___NRRHKHKGREKQEKE-SNGPVQLSKFxxxDKEDNVRRSAVSGKKILLKVDKTKEDKLAENNRSELLKFLNASYD
F4K5Q4________________HKRHKNRERKKGEGEGSSGPVKLSKFxxxDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain