SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2

Length: 1380 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17040	9/36
SustainPine v2.0	sp_v2.0_unigene25492	27/36

Source	Descriptions	Term	Type	Identity
AutoFact	Tumor suppressor candidate, putative n=1 Tax=Ricinus communis RepID=B9RXQ7_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	tumor suppressor	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3		IPR003612	-	-
Sma3	Magnesium transporter protein 1	IPR006844	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9F5

Fln msg:

Fln protein: MAKEAMRVLAVGMALMMLMATAVKGRWEWEEEEEELVNLQSRSKAGVIHLDDSSLERFAVKAKPRLYSLIIFFDAVQLREKPELRLDLLRAEFELVASSFLKNNQGQPSATKVFFCDIEFGESQASFGKFGVNTLPHIVHVGPGSTKLKDAESMEQNEIARSAEGIAAFVESKTKYHVGSIERPPPISKKQVIFVGGVLVLAAPFVVKRILTQDTPLHDPKVWLASAVFIYFFSVSGAMHNIIRKMPLFMADRNNPNKLVFFIQGSGVQLGAEGFAVGFLYTLVGLLLAFVTHFLAYVKSQNAQRLLMLITMAVSFWAVKKVISLDNWKTGYGIHGFWPSAWE*

Protein Length: 345

Fln nts: ATGGGGATTGCTCAGTGCTGAGAGAGGGGACGAAGGGGAAACACAGCAGAGGCG_-_ATGGCGAAGGAGGCGATGCGCGTGTTGGCGGTGGGAATGGCGTTAATGATGTTAATGGCCACCGCAGTCAAGGGAAGGTGGGAATGGGAAGAGGAAGAGGAGGAACTGGTGAATTTACAGTCTAGGTCCAAGGCCGGAGTCATCCACCTGGACGACTCTTCGTTGGAGCGCTTCGCCGTGAAGGCCAAGCCCAGATTGTATTCCCTCATCATTTTCTTCGACGCCGTGCAGCTGCGGGAGAAGCCGGAGCTCCGCCTCGATCTGCTTCGCGCCGAGTTCGAACTGGTGGCCTCATCTTTCCTAAAGAACAACCAGGGCCAACCCTCGGCCACCAAGGTCTTCTTCTGTGATATCGAATTCGGAGAATCTCAGGCGAGTTTTGGGAAATTCGGAGTGAATACGCTACCCCACATCGTCCACGTTGGCCCCGGGAGTACCAAACTGAAGGACGCGGAGTCGATGGAGCAGAACGAGATTGCGAGATCGGCAGAGGGCATTGCTGCATTTGTGGAATCGAAAACCAAGTACCACGTGGGGTCGATCGAGCGGCCACCGCCGATTTCGAAGAAGCAGGTGATCTTTGTGGGCGGGGTGTTGGTATTGGCCGCCCCCTTCGTTGTCAAGAGGATCTTGACCCAGGACACGCCCTTGCATGACCCCAAGGTTTGGCTGGCCTCAGCAGTTTTCATCTATTTCTTCAGTGTCTCCGGCGCTATGCACAACATTATTCGGAAGATGCCGCTTTTCATGGCGGACAGGAACAATCCCAACAAATTGGTCTTCTTTATCCAGGGCTCTGGCGTCCAGCTGGGCGCCGAGGGTTTTGCCGTAGGGTTTTTGTATACGCTGGTGGGGTTGCTGCTCGCCTTTGTCACGCATTTTCTAGCTTATGTGAAAAGCCAGAACGCGCAGAGGTTGCTCATGCTGATCACAATGGCTGTCTCCTTCTGGGCGGTGAAAAAGGTCATATCTTTGGATAACTGGAAGACTGGCTACGGGATACACGGTTTCTGGCCTTCTGCCTGGGAATGA___ACGGAGCTCCTCATTGCTCGCAGGTTTTCTTCTGCTTCACAGAATCTTGTTTGCTACACACACTGGAATCTTGTAATTCTGGCGTCGTCATTGCTTTTAAATATATTTTTCGGTGGTAGGTACTTCTCGTATTTTAGTTTAAACATTCAAAATATGTGAGGTATACGATCTGTATGGCATTTCCTTCTGCCTTTGCCAGATTGTTTGACTTGTCCATGCAACAAATTAAAGAAGATCGTTGAATGAATAGTACAATCTTCTTTTCAACAATAAGTTGAGAATTTAATTTTAGGT

Fln Alignment:

Contig2___KGRXXXXXXXXXLVNLQSRSKAGVIHLDDSSLERFAVKAKPRLYSLIIFFDAVQLREKPELRLDLLRAEFELVASSFLKNNQGQPSATKVFFCDIEFGESQASFGKFGVNTLPHIVHVGPGSTKLKDAESMEQNEIARSAEGIAAFVESKTKYHVGSIERPPPISKKQVIFVGGVLVLAAPFVVKRILTQDTPLHDPKVWLASAVFIYFFSVSGAMHNIIRKMPLFMADRNNPNKLVFFIQGSGVQLGAEGFAVGFLYTLVGLLLAFVTHFLAYVKSQNAQRLLMLITMAVSFWAVKKVISLDNWKTGYGIHGFWPSAWE
D5A9F5______________RGRWEWEEEEEELVNMQSRSRAGVIHLDDSSLERFAVKAKSRSYSLVIFFDAVQLRDKPELRLDLLRTEFELVASAFLKNNHGQPSATKVFFCDIEFGESQASFGNFGANTLPHIRHVGPGNTKLKDAESMEQNEMARTAEGIAAFVESKTKFRVGPIERPPPISKKQVVFVGGVLVLAAPFVIKRILTQDTPLHDPKVWLASAVFIYFFSVSGAMHNIIRKMPLFMADKNDPNSLVFFIQGSGVQLGAEGFAVGFLYTLVGLLLAFVTHFLVYVKSQNAQRLFMLITMAVSFWAVRKVISLDNWKTGYGIHGFWPSAWE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
895	20		80		0.995493
907	40		60		1.0
940	66		33		1.0
942		77		22	0.999999
948		11		88	0.923564
1057	77	22			0.999999
1082			71	28	1.0
1099		83		16	0.999991
1112		18		81	0.999994
1125		81		18	0.999994
1150		81	18		0.999994
1169		18	81		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain