Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene4170 SustainPine v1.1 1129
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Putative Complete
sp_v1.1_unigene14551 SustainPine v1.1 715
• AutoFact: Unassigned protein 0.0001
Coding
sp_v1.1_unigene20235 SustainPine v1.1 343
• AutoFact: Unknown EST 6.0e-12
unknown
sp_v1.1_unigene21398 SustainPine v1.1 474
• AutoFact: Retrotrans_gag domain containing protein 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v1.1_unigene25554 SustainPine v1.1 736
• AutoFact: similar to polyprotein 7.0e-15
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon protein 5.28592e-17
Internal
sp_v1.1_unigene26987 SustainPine v1.1 570
• AutoFact: gag-protease polyprotein [Cucumis melo] 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: hypothetical protein VITISV_006389 [Vitis vinifera] 1.81967e-11
Internal
sp_v1.1_unigene33560 SustainPine v1.1 777
• AutoFact: Retrotrans_gag domain containing protein 9.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: hypothetical protein VITISV_029160 [Vitis vinifera] 5.69734e-12
Internal
sp_v1.1_unigene34780 SustainPine v1.1 620
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: PREDICTED: hypothetical protein [Vitis vinifera] 1.85268e-13
Putative N-terminus
sp_v1.1_unigene38566 SustainPine v1.1 489
• AutoFact: Retrotrans_gag domain containing protein 4.0e-10
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative N-terminus
sp_v1.1_unigene51423 SustainPine v1.1 170
unknown
sp_v1.1_unigene52269 SustainPine v1.1 370
• AutoFact: Retrotrans_gag domain containing protein 1.0e-09
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: protein 4.76971e-19
Internal
sp_v1.1_unigene52625 SustainPine v1.1 250
• AutoFact: Retrotrans_gag domain containing protein 3.0e-05
unknown
sp_v1.1_unigene58201 SustainPine v1.1 520
• AutoFact: Retroelement pol polyprotein-like n=1 Tax=Arabidopsis thaliana RepID=Q9LHC7_ARATH 4.0e-08
• FL-Next: tr=Retroelement pol polyprotein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v1.1_unigene59978 SustainPine v1.1 920
• AutoFact: Putative retroelement n=1 Tax=Oryza sativa RepID=Q947Z9_ORYSA 6.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 2.2515e-11
N-terminus
sp_v1.1_unigene65996 SustainPine v1.1 594
• AutoFact: Unknown EST 0.0
Coding
sp_v1.1_unigene67330 SustainPine v1.1 398
• AutoFact: Retrotrans_gag domain containing protein 1.0e-10
unknown
sp_v1.1_unigene67960 SustainPine v1.1 331
• AutoFact: Retrotrans_gag domain containing protein 9.0e-07
unknown
sp_v1.1_unigene70288 SustainPine v1.1 387
• AutoFact: similar to Retrovirus-related Pol polyprotein from transposon 297 4.0e-05
• FL-Next: tr=Putative uncharacterized protein Sb10g006600; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v1.1_unigene70457 SustainPine v1.1 208
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v1.1_unigene72295 SustainPine v1.1 255
• AutoFact: Retrotrans_gag domain containing protein 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain