| General Information |
| Organism: |
Pinus pinaster |
| Tissue: |
several |
| Description: |
complete assembly of Pinus pinaster. Include sequences from UMA, Biogeco 1, Biogeco 2,UAGPF
|
| Assembly Statistics |
|
| Number of used reads: |
2193003 |
| Mean read length: |
274 |
| Number of unigenes: |
91086 |
| Mean contig length: |
579 |
| SNPs statistics |
|
| Tot. SNPs: |
688265 |
| Unigenes with SNPs: |
44517 |
| Mean SNPs per unigene: |
15.4 |
| SSRs statistics |
|
| Tot. SSRs: |
3551 |
| Mean SSRs per unigene: |
1.1 |
| SSRs di-nucl. : |
252 |
| SSRs tri-nucl. : |
1992 |
| SSRs > tri-nucl. : |
1307 |
| Annotations statistics |
|
| Annotated unigenes: |
68742 |
| Descriptions: |
44370 |
| Gos: |
3952 |
| Interpros: |
5069 |
| ECs: |
1329 |
| Keggs: |
147 |
|
| Project components |
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|
| Assembly components: |
|
| Unigenes file: |
sustainpine_v1.1_unigenes.fasta |
|
| ACE file: |
sustainpine_v1.1.ace |
|
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| Download annotations for specified unigenes: |
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| SFFs: |
| File 1: |
Canovas_RL1.sff, GD4IA4402.sff,GD4IA4403.sff,GD4IA4404.sff, GDTE5QK01.sff |
Not available
|
| File 2: |
Biogeco1 |
Download(NCBI)
|
| File 3: |
Biogeco2 |
Download(NCBI)
|
| File 4: |
UAGPF |
Download(NCBI)
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| SeqTrimNext reports: |
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