Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: HRDC-like

Term: IPR010997  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene2322 SustainPine v1.1 3087
AutoFact: 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 3 -5 0.0
Putative Complete
sp_v1.1_unigene22591 SustainPine v1.1 964
AutoFact: NRPB4; NRPB4; DNA-directed RNA polymerase; K03012 DNA-directed RNA polymerase II subunit D 0.0
FL-Next: tr=RPB15.9; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: kda subunit of rna polymerase ii 0.0
Complete
sp_v1.1_unigene26645 SustainPine v1.1 985
AutoFact: NRPB4; NRPB4; DNA-directed RNA polymerase; K03012 DNA-directed RNA polymerase II subunit D 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: kda subunit of rna polymerase ii 0.0
Complete
sp_v1.1_unigene33026 SustainPine v1.1 455
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9SXG0_RICCO 1.0e-22
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 2.63987e-22
Internal
sp_v1.1_unigene45944 SustainPine v1.1 475
AutoFact: catalytic/ nucleotide binding 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: catalytic nucleotide binding 3.69917e-24
Putative Complete
sp_v1.1_unigene62493 SustainPine v1.1 460
AutoFact: similar to Os07g0681600; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.1.-] 2.0e-35
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: atp-dependent dna helicase recq 1.70451e-37
Internal
sp_v1.1_unigene79427 SustainPine v1.1 904
AutoFact: NRPB4; NRPB4; DNA-directed RNA polymerase; K03012 DNA-directed RNA polymerase II subunit D 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: kda subunit of rna polymerase ii 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain