Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Reverse transcriptase, RNA-dependent DNA polymerase

Term: IPR013103  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene58172 SustainPine v1.1 521
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE9_ARATH 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retroelement pol polyprotein 3.47139e-31
Internal
sp_v1.1_unigene58207 SustainPine v1.1 564
• AutoFact: Gag-pol polyprotein n=6 Tax=Glycine max RepID=Q84VH6_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gag-pol polyprotein 0.0
N-terminus
sp_v1.1_unigene61648 SustainPine v1.1 356
• AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10KL1_ORYSJ 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 1.02524e-16
Internal
sp_v1.1_unigene64986 SustainPine v1.1 581
• AutoFact: RVT_2 domain containing protein 8.40779e-45
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: hypothetical protein VITISV_028342 [Vitis vinifera] 0.0
Internal
sp_v1.1_unigene65026 SustainPine v1.1 385
• AutoFact: Putative Zea mays retrotransposon Opie-2 n=2 Tax=Oryza sativa Japonica Group RepID=Q8H7T1_ORYSJ 9.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gag-pol polyprotein 6.97778e-39
N-terminus
sp_v1.1_unigene65964 SustainPine v1.1 230
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 2.0e-06
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v1.1_unigene66243 SustainPine v1.1 418
• AutoFact: gag-pol polyprotein [Glycine max] 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gag-pol polyprotein 1.09829e-39
Putative N-terminus
sp_v1.1_unigene66427 SustainPine v1.1 489
• AutoFact: putative retroelement pol polyprotein [Arabidopsis thaliana] 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retroelement pol polyprotein 3.87155e-29
Internal
sp_v1.1_unigene67075 SustainPine v1.1 389
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reverse transcriptase 3.7108e-16
Internal
sp_v1.1_unigene67303 SustainPine v1.1 289
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q5W6T2_ORYSJ 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gag-pol polyprotein 4.4803e-17
Internal
sp_v1.1_unigene67526 SustainPine v1.1 264
• AutoFact: Retroelement pol polyprotein-like n=1 Tax=Arabidopsis thaliana RepID=Q9LJ55_ARATH 6.0e-13
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: retroelement pol poly 5.08571e-13
Internal
sp_v1.1_unigene67691 SustainPine v1.1 340
• AutoFact: CCHC-type integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCC5_POPTR 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 2.4032e-19
Internal
sp_v1.1_unigene67692 SustainPine v1.1 176
• AutoFact: Putative Zea mays retrotransposon Opie-2 n=2 Tax=Oryza sativa Japonica Group RepID=Q8H7T1_ORYSJ 9.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v1.1_unigene67958 SustainPine v1.1 407
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q688L2_ORYSJ 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon ty1-copia subclass 1.71456e-18
N-terminus
sp_v1.1_unigene69282 SustainPine v1.1 143
• AutoFact: RVT_2 domain containing protein 5.0e-08
unknown
sp_v1.1_unigene70891 SustainPine v1.1 149
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06286_PINCU 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reverse transcriptase 7.19148e-15
Internal
sp_v1.1_unigene71369 SustainPine v1.1 384
• AutoFact: Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 5.9189e-30
N-terminus
sp_v1.1_unigene72077 SustainPine v1.1 303
• AutoFact: RVT_2 domain containing protein 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hypothetical protein VITISV_004365 [Vitis vinifera] 3.04591e-18
Internal
sp_v1.1_unigene73063 SustainPine v1.1 404
• AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Spermatophyta RepID=P93687_SECCE 5.0e-20
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: reverse transcriptase 9.47422e-20
Internal
sp_v1.1_unigene73381 SustainPine v1.1 455
• AutoFact: Putative gag-pol polyprotein, identical [Solanum demissum] 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 1.04562e-26
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain