Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: DNA repair protein (XPGC)/yeast Rad

Term: IPR006084  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene7830 SustainPine v1.1 1181
AutoFact: endonuclease, putative; K04799 flap endonuclease-1 [EC:3.-.-.-] 0.0
FL-Next: sp=Flap endonuclease 1-A; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: rad2 family 0.0
N-terminus
sp_v1.1_unigene9385 SustainPine v1.1 1519
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDJ8_RICCO 0.0
FL-Next: sp=Flap endonuclease GEN-like 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna binding 0.0
C-terminus
sp_v1.1_unigene11193 SustainPine v1.1 1346
AutoFact: DNA-repair protein UVH3, putative n=1 Tax=Ricinus communis RepID=B9RUC5_RICCO 0.0
FL-Next: sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-repair protein 0.0
Internal
sp_v1.1_unigene19640 SustainPine v1.1 944
AutoFact: Flap endonuclease-1, putative n=1 Tax=Ricinus communis RepID=B9RFS3_RICCO 7.0e-07
FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v1.1_unigene36927 SustainPine v1.1 880
AutoFact: flap endonuclease-1, putative; K04799 flap endonuclease-1 [EC:3.-.-.-] 0.0
FL-Next: sp=Flap endonuclease 1-A; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: flap endonuclease- 0.0
Putative C-terminus
sp_v1.1_unigene40689 SustainPine v1.1 228
AutoFact: exonuclease, putative; K10746 exonuclease 1 [EC:3.1.-.-] 4.0e-27
FL-Next: Isoform 2 of Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 0.0
Blast2go: protein 4.7308e-27
Internal
sp_v1.1_unigene42318 SustainPine v1.1 659
AutoFact: Contains similarity to excision repair protein ERCC5 from Homo sapiens gi|1082359 and contains XPG N-terminal PF|00752 and XPG I-region PF|00867 domains [Arabidopsis thaliana] 1.0e-27
FL-Next: sp=Flap endonuclease GEN-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna binding 1.25564e-29
N-terminus
sp_v1.1_unigene48910 SustainPine v1.1 303
AutoFact: DNA-repair protein UVH3, putative; K10846 DNA excision repair protein ERCC-5 6.0e-32
FL-Next: sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-repair protein 1.49679e-33
Internal
sp_v1.1_unigene63794 SustainPine v1.1 188
AutoFact: DNA-repair protein UVH3, putative n=1 Tax=Ricinus communis RepID=B9RUC5_RICCO 5.0e-14
FL-Next: sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-repair protein 1.03698e-13
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain