Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type

Term: IPR006649  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene6346 SustainPine v1.1 942
• AutoFact: small nuclear ribonucleoprotein sm d1, putative; K11087 small nuclear ribonucleoprotein D1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d1 0.0
Complete
sp_v1.1_unigene7116 SustainPine v1.1 1504
• AutoFact: lsm1, putative; K12620 U6 snRNA-associated Sm-like protein LSm1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene10249 SustainPine v1.1 1253
• AutoFact: ACYPI001376; similar to LSM11 protein 3.0e-12
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene16194 SustainPine v1.1 862
• AutoFact: Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RSP3_PHYPA 4.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein e 3.17016e-41
Complete
sp_v1.1_unigene16557 SustainPine v1.1 1044
• AutoFact: Glycine rich protein-like n=4 Tax=Arabidopsis RepID=Q8LAC6_ARATH 8.00001e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycine rich 7.00649e-45
Complete
sp_v1.1_unigene18669 SustainPine v1.1 810
• AutoFact: Snrnp sm protein, putative n=6 Tax=Embryophyta RepID=B9T2G3_RICCO 6.02558e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene21643 SustainPine v1.1 972
• AutoFact: similar to Os11g0657300; K11098 small nuclear ribonucleoprotein F 4.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein f 1.51527e-36
Complete
sp_v1.1_unigene21663 SustainPine v1.1 1144
• AutoFact: small nuclear ribonucleoprotein sm d1, putative; K11087 small nuclear ribonucleoprotein D1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d1 0.0
Complete
sp_v1.1_unigene21860 SustainPine v1.1 621
• AutoFact: small nuclear ribonucleoprotein, putative; K11088 small nuclear ribonucleoprotein D3 5.04467e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d3 0.0
Complete
sp_v1.1_unigene21960 SustainPine v1.1 990
• AutoFact: small nuclear ribonucleoprotein-associated protein, putative; K11086 small nuclear ribonucleoprotein B and B' 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein 9.57279e-35
Putative Complete
sp_v1.1_unigene23224 SustainPine v1.1 1248
• AutoFact: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12626 U6 snRNA-associated Sm-like protein LSm7 3.99931e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene23970 SustainPine v1.1 1137
• AutoFact: SAD1; SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1); RNA binding; K12624 U6 snRNA-associated Sm-like protein LSm5 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 2.22232e-41
Complete
sp_v1.1_unigene26060 SustainPine v1.1 1277
• AutoFact: small nuclear ribonucleoprotein, putative; K11088 small nuclear ribonucleoprotein D3 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d3 0.0
Complete
sp_v1.1_unigene45169 SustainPine v1.1 321
• AutoFact: Probable small nuclear ribonucleoprotein E n=1 Tax=Drosophila melanogaster RepID=RUXE_DROME 4.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein e 5.56959e-36
Putative Complete
sp_v1.1_unigene45252 SustainPine v1.1 396
• AutoFact: small nuclear riboprotein F; K11098 small nuclear ribonucleoprotein F 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear riboprotein f 7.30221e-36
Complete
sp_v1.1_unigene60018 SustainPine v1.1 844
• AutoFact: small nuclear ribonucleoprotein, putative; K11088 small nuclear ribonucleoprotein D3 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d3 3.2937e-40
Complete
sp_v1.1_unigene75820 SustainPine v1.1 498
• AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Zea mays RepID=B6TY08_MAIZE 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein g 8.23693e-24
Complete
sp_v1.1_unigene76034 SustainPine v1.1 645
• AutoFact: Small nuclear ribonucleoprotein-associated protein, putative n=2 Tax=Ricinus communis RepID=B9SV77_RICCO 3.0e-32
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein 1.87172e-33
N-terminus
sp_v1.1_unigene79486 SustainPine v1.1 460
• AutoFact: Small nuclear ribonucleoprotein polypeptide G (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677D4_HYAOR 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein g 8.56871e-25
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain