Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene3476 SustainPine v1.1 1530
AutoFact: SVR1; SVR1 (SUPPRESSOR OF VARIEGATION 1); RNA binding / pseudouridine synthase 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene12225 SustainPine v1.1 530
AutoFact: 40S ribosomal protein S9 n=2 Tax=Agaricomycetes incertae sedis RepID=B8P5V0_POSPM 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s9 0.0
Putative C-terminus
sp_v1.1_unigene14460 SustainPine v1.1 439
AutoFact: Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: protein 0.0
Putative C-terminus
sp_v1.1_unigene16490 SustainPine v1.1 1341
AutoFact: 40S ribosomal protein S4, putative; K02987 small subunit ribosomal protein S4e 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s4 0.0
Complete
sp_v1.1_unigene23221 SustainPine v1.1 1850
AutoFact: 40S ribosomal protein S9-2 n=1 Tax=Arabidopsis thaliana RepID=RS92_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s9 0.0
Complete
sp_v1.1_unigene23596 SustainPine v1.1 728
AutoFact: 40S ribosomal protein S9-2 n=1 Tax=Arabidopsis thaliana RepID=RS92_ARATH 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s9 6.44597e-44
Putative C-terminus
sp_v1.1_unigene24965 SustainPine v1.1 1395
AutoFact: 40S ribosomal protein S4, putative; K02987 small subunit ribosomal protein S4e 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s4 0.0
Complete
sp_v1.1_unigene26183 SustainPine v1.1 890
AutoFact: Ribosomal protein S4 n=2 Tax=Cucurbitaceae RepID=D5I3F8_CUCPE 0.0
FL-Next: sp=30S ribosomal protein S4, chloroplastic; Abies firma (Momi fir). Plastid; Chloroplast. 0.0
Blast2go: ribosomal protein s4 0.0
Putative Complete
sp_v1.1_unigene26827 SustainPine v1.1 1289
AutoFact: 40S ribosomal protein S4, putative; K02987 small subunit ribosomal protein S4e 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s4 0.0
Complete
sp_v1.1_unigene29210 SustainPine v1.1 874
AutoFact: Hemolysin A, putative; K06442 putative hemolysin 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hemolysin a 0.0
N-terminus
sp_v1.1_unigene38478 SustainPine v1.1 705
AutoFact: RNA pseudourine synthase 2, chloroplastic n=2 Tax=Oryza sativa RepID=PUS2_ORYSJ 1.4013e-45
FL-Next: sp=RNA pseudourine synthase 2, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: ribosomal large subunit pseudouridine synthase-like 1.4013e-45
N-terminus
sp_v1.1_unigene59104 SustainPine v1.1 1471
AutoFact: 40S ribosomal protein S4, putative; K02987 small subunit ribosomal protein S4e 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s4 0.0
Complete
sp_v1.1_unigene81451 SustainPine v1.1 579
AutoFact: 40S ribosomal protein S4 (RPS4D); K02987 small subunit ribosomal protein S4e 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s4 0.0
N-terminus
sp_v1.1_unigene81474 SustainPine v1.1 777
AutoFact: 40S ribosomal protein S4, putative; K02987 small subunit ribosomal protein S4e 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s4 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain