Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA-binding, CRM domain

Term: IPR001890  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene2139 SustainPine v1.1 1004
AutoFact: RNA binding 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.21606e-38
C-terminus
sp_v1.1_unigene5713 SustainPine v1.1 737
AutoFact: CFM3; CRM family member 3 0.0
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: crm family member 3 0.0
Putative C-terminus
sp_v1.1_unigene6326 SustainPine v1.1 467
AutoFact: CRS2-associated factor 1, mitochondrial n=2 Tax=Oryza sativa RepID=CAF1M_ORYSJ 4.0e-23
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: crs2-associated factor 1 2.3099e-24
Putative C-terminus
sp_v1.1_unigene37220 SustainPine v1.1 760
AutoFact: RNA binding 4.06377e-44
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: crs2-associated factor 1 0.0
N-terminus
sp_v1.1_unigene39729 SustainPine v1.1 433
AutoFact: ATCFM2; ATCFM2 (CRM FAMILY MEMBER 2); RNA binding 2.99878e-43
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: crm family member 3 6.05361e-43
Internal
sp_v1.1_unigene46845 SustainPine v1.1 546
AutoFact: ATCFM2; ATCFM2 (CRM FAMILY MEMBER 2); RNA binding 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 1.89239e-36
Internal
sp_v1.1_unigene46890 SustainPine v1.1 507
AutoFact: RNA binding 0.0
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene50628 SustainPine v1.1 368
AutoFact: ATCFM2; ATCFM2 (CRM FAMILY MEMBER 2); RNA binding 7.0e-20
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atcfm2 (crm family member 2) rna binding 4.94611e-21
Internal
sp_v1.1_unigene58530 SustainPine v1.1 1119
AutoFact: group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: group ii intron splicing factor crs1-like 0.0
Putative N-terminus
sp_v1.1_unigene61277 SustainPine v1.1 267
AutoFact: Gb|AAF24608.1 n=2 Tax=Arabidopsis RepID=Q9LS51_ARATH 2.0e-14
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: emb1865 (embryo defective 1865) rna binding 3.50847e-14
Internal
sp_v1.1_unigene77289 SustainPine v1.1 159
AutoFact: CRS2-associated factor 1, chloroplastic n=3 Tax=Andropogoneae RepID=CAF1P_MAIZE 1.0e-18
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: crs2-associated factor 1 2.35948e-18
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain