Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA-processing protein, HAT helix

Term: IPR003107  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene2090 SustainPine v1.1 2364
AutoFact: CRN (Crooked neck) protein n=1 Tax=Arabidopsis thaliana RepID=Q9FNM3_ARATH 0.0
FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Blast2go: crooked neck cell cycle 0.0
Putative C-terminus
sp_v1.1_unigene6643 SustainPine v1.1 1095
AutoFact: Pre-mRNA splicing factor, putative n=1 Tax=Ricinus communis RepID=B9RW28_RICCO 0.0
FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Blast2go: pre-mrna splicing factor 0.0
Internal
sp_v1.1_unigene8455 SustainPine v1.1 2250
AutoFact: plant RNA cleavage stimulation factor, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: cleavage stimulation 3 pre- subunit 77kda 0.0
C-terminus
sp_v1.1_unigene11469 SustainPine v1.1 1940
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-rrna processing protein rrp5 0.0
Putative Complete
sp_v1.1_unigene12141 SustainPine v1.1 506
AutoFact: XPA-binding protein, putative; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: adapter protein ath-55 0.0
Internal
sp_v1.1_unigene12250 SustainPine v1.1 598
AutoFact: transcription-coupled DNA repair protein-related; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene12632 SustainPine v1.1 1385
AutoFact: Pre-mRNA splicing factor, putative n=1 Tax=Ricinus communis RepID=B9RW28_RICCO 0.0
FL-Next: tr=Pre-mRNA splicing factor, putative; Ricinus communis (Castor bean). 0.0
Blast2go: pre-mrna splicing factor 0.0
Internal
sp_v1.1_unigene14150 SustainPine v1.1 1282
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene26958 SustainPine v1.1 2261
AutoFact: Pre-mRNA-processing protein prp39, putative; K13217 pre-mRNA-processing factor 39 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene27497 SustainPine v1.1 4123
AutoFact: Pre-mRNA-processing protein prp39, putative n=1 Tax=Ricinus communis RepID=B9SKM7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v1.1_unigene57574 SustainPine v1.1 946
AutoFact: Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO 0.0
FL-Next: tr=Squamous cell carcinoma antigen recognized by T-cells, putative; Ricinus communis (Castor bean). 0.0
Blast2go: rna recognition motif -containing protein 0.0
N-terminus
sp_v1.1_unigene68859 SustainPine v1.1 276
AutoFact: Plant RNA cleavage stimulation factor, putative n=1 Tax=Ricinus communis RepID=B9S078_RICCO 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: pre-mrna 3 -end processing protein 3.45645e-30
Putative N-terminus
sp_v1.1_unigene84108 SustainPine v1.1 1417
AutoFact: Pre-mRNA-processing protein prp39, putative; K13217 pre-mRNA-processing factor 39 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain