Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Zinc finger, CCHC retroviral-type

Term: IPR013084  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene20609 SustainPine v1.1 1116
AutoFact: Replication factor A 1, rfa1, putative n=1 Tax=Ricinus communis RepID=B9S1L9_RICCO 0.0
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: replication factor a 0.0
Complete
sp_v1.1_unigene21866 SustainPine v1.1 1569
AutoFact: arginine/serine-rich splicing factor, putative 9.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing 7.28629e-31
Complete
sp_v1.1_unigene24903 SustainPine v1.1 943
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.49808e-29
N-terminus
sp_v1.1_unigene25090 SustainPine v1.1 1017
AutoFact: OSJNBa0063G07.6 protein n=2 Tax=Oryza sativa RepID=Q7XP45_ORYSJ 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 4.50996e-27
Putative Complete
sp_v1.1_unigene25121 SustainPine v1.1 769
AutoFact: DUF1430 domain containing protein 0.0001
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ac055769_6copia-type 28768-32772 2.66573e-14
C-terminus
sp_v1.1_unigene25294 SustainPine v1.1 1265
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative Complete
sp_v1.1_unigene25295 SustainPine v1.1 1366
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 4.00001e-40
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Blast2go: gag-pol polyprotein 1.10511e-40
N-terminus
sp_v1.1_unigene25430 SustainPine v1.1 935
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene26083 SustainPine v1.1 785
AutoFact: Truncated copia-type polyprotein n=1 Tax=Glycine max RepID=C0JJI1_SOYBN 6.0e-14
FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
Blast2go: gag-pol polyprotein 5.61179e-15
C-terminus
sp_v1.1_unigene26127 SustainPine v1.1 628
AutoFact: Unassigned protein 5.0e-06
FL-Next: tr=Putative uncharacterized protein Sb05g019550; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v1.1_unigene26875 SustainPine v1.1 392
AutoFact: Unknown EST 2.0e-22
unknown
sp_v1.1_unigene29304 SustainPine v1.1 2554
AutoFact: glycine-rich RNA-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 0.0
Complete
sp_v1.1_unigene30820 SustainPine v1.1 280
AutoFact: 5'->3' exoribonuclease, putative; K12619 5'-3' exoribonuclease 2 [EC:3.1.13.-] 5.0e-32
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Blast2go: 5 - 1.25873e-32
Internal
sp_v1.1_unigene33323 SustainPine v1.1 168
AutoFact: zf-CCHC domain containing protein 0.0001
unknown
sp_v1.1_unigene34253 SustainPine v1.1 249
AutoFact: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO 3.0e-35
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Blast2go: 5 -3 exoribonuclease 2 5.99363e-35
Internal
sp_v1.1_unigene35294 SustainPine v1.1 1199
AutoFact: RNA binding protein n=3 Tax=Andropogoneae RepID=B6TN55_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding protein 0.0
Putative C-terminus
sp_v1.1_unigene37403 SustainPine v1.1 511
AutoFact: NV18911; similar to retrotransposon protein, putative, Ty1-copia subclass 7.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.55185e-12
Putative C-terminus
sp_v1.1_unigene37410 SustainPine v1.1 941
AutoFact: zf-CCHC multi-domain protein 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hypothetical protein VITISV_024822 [Vitis vinifera] 0.0
Putative N-terminus
sp_v1.1_unigene39608 SustainPine v1.1 260
AutoFact: Putative gag protein n=1 Tax=Zea mays RepID=Q8W0Y3_MAIZE 6.0e-07
FL-Next: tr=Putative gag-pol polyprotein; Zea mays (Maize). 0.0
Internal
sp_v1.1_unigene40908 SustainPine v1.1 628
AutoFact: Unknown EST 1.0e-25
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain