Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Zinc finger, CCHC retroviral-type

Term: IPR013084  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene1619 SustainPine v1.1 1046
• AutoFact: replication factor A 1, rfa1, putative; K07466 replication factor A1 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: replication factor a 0.0
Putative C-terminus
sp_v1.1_unigene3190 SustainPine v1.1 1679
• AutoFact: Zinc knuckle family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LPE8_ARALY 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc knuckle (cchc-type) family protein 0.0
Complete
sp_v1.1_unigene3711 SustainPine v1.1 1257
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene4288 SustainPine v1.1 1611
• AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gag-pol identical 0.0
Putative N-terminus
sp_v1.1_unigene6633 SustainPine v1.1 910
• AutoFact: actin depolymerizing factor, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc knuckle (cchc-type) family protein 0.0
N-terminus
sp_v1.1_unigene7092 SustainPine v1.1 1158
• AutoFact: Polyprotein n=1 Tax=Phanerochaete chrysosporium RP-78 RepID=Q45W66_PHACH 8.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 1.70393e-12
Putative Complete
sp_v1.1_unigene8700 SustainPine v1.1 537
• AutoFact: emb1441 (embryo defective 1441); nucleic acid binding / zinc ion binding 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
• Blast2go: zinc knuckle family expressed 2.31847e-28
Internal
sp_v1.1_unigene9848 SustainPine v1.1 1899
• AutoFact: pre-mRNA processing factor [Triticum aestivum] 1.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing arginine serine-rich 7 0.0
Complete
sp_v1.1_unigene11244 SustainPine v1.1 915
• AutoFact: splicing factor-related; K13095 splicing factor 1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
sp_v1.1_unigene12482 SustainPine v1.1 763
• AutoFact: zinc finger protein, putative; K13095 splicing factor 1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
sp_v1.1_unigene14821 SustainPine v1.1 1856
• AutoFact: ATRZ-1A; RNA binding / nucleotide binding 5.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene15295 SustainPine v1.1 1491
• AutoFact: Putative zinc finger protein n=1 Tax=Hyacinthus orientalis RepID=Q6EIC6_HYAOR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cellular nucleic acid binding 0.0
Complete
sp_v1.1_unigene15931 SustainPine v1.1 1333
• AutoFact: [OU] COG5082 Arginine methyltransferase-interacting protein, contains RING Zn-finger 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cellular nucleic acid binding 0.0
Complete
sp_v1.1_unigene16911 SustainPine v1.1 1317
• AutoFact: Polyprotein n=1 Tax=Drosophila melanogaster RepID=B6V6Z8_DROME 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 2.13032e-11
Putative Complete
sp_v1.1_unigene17028 SustainPine v1.1 1591
• AutoFact: arginine/serine-rich splicing factor, putative 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 7.39358e-31
Complete
sp_v1.1_unigene17139 SustainPine v1.1 1472
• AutoFact: arginine/serine-rich splicing factor, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 0.0
Complete
sp_v1.1_unigene17451 SustainPine v1.1 914
• AutoFact: Swi3 multi-domain protein 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
N-terminus
sp_v1.1_unigene19232 SustainPine v1.1 792
• AutoFact: zf-CCHC domain containing protein 2.0e-05
• FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
• Blast2go: hypothetical protein VITISV_028182 [Vitis vinifera] 0.0
Internal
sp_v1.1_unigene19604 SustainPine v1.1 681
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa Japonica Group RepID=Q2QP15_ORYSJ 6.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon ty1-copia subclass 4.47848e-17
Putative Complete
sp_v1.1_unigene20047 SustainPine v1.1 561
• AutoFact: Zinc knuckle family protein n=2 Tax=Tetrahymena thermophila RepID=Q24BQ3_TETTH 5.0e-09
• FL-Next: tr=Putative uncharacterized protein At3g43590; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain