Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene29173 SustainPine v1.1 654
AutoFact: HAT 3.1 [Arabidopsis thaliana] 5.60519e-45
FL-Next: sp=Homeobox protein HAT3.1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: homeobox protein 8.40779e-45
Internal
sp_v1.1_unigene29959 SustainPine v1.1 611
AutoFact: PHD finger family protein [Arabidopsis thaliana] gb|AAF26130.1|AC011620_6 unknown protein [Arabidopsis thaliana] gb|AAM53309.1| unknown protein [Arabidopsis thaliana] gb|AAO00928.1| unknown protein [Arabidopsis thaliana] 4.0e-34
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: protein 5.15144e-37
Putative C-terminus
sp_v1.1_unigene30394 SustainPine v1.1 967
AutoFact: EBP1501; BAH-PHD domain-containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ebs-bah-phd domain-containing protein 0.0
Complete
sp_v1.1_unigene31542 SustainPine v1.1 737
AutoFact: PHD finger family protein 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v1.1_unigene32814 SustainPine v1.1 1383
AutoFact: DNA binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Complete
sp_v1.1_unigene32920 SustainPine v1.1 604
AutoFact: 2x PHD domain containing protein 6.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 0.0
C-terminus
sp_v1.1_unigene33191 SustainPine v1.1 396
AutoFact: SIZ1; SIZ1; DNA binding / SUMO ligase 7.0e-25
FL-Next: Isoform 2 of E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 0.0
Blast2go: protein 3.61752e-27
Internal
sp_v1.1_unigene38081 SustainPine v1.1 790
AutoFact: chromodomain helicase DNA binding protein, putative (EC:2.7.11.1) 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 5.87291e-28
Putative N-terminus
sp_v1.1_unigene40317 SustainPine v1.1 506
AutoFact: PHD domain containing protein 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 1.33517e-21
Putative N-terminus
sp_v1.1_unigene40783 SustainPine v1.1 377
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SH81_RICCO 2.0e-09
FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v1.1_unigene43368 SustainPine v1.1 438
AutoFact: EMB1135 (embryo defective 1135); DNA binding / protein binding / zinc ion binding 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring fyve phd zinc finger domain-containing protein 6.43384e-37
Putative N-terminus
sp_v1.1_unigene46281 SustainPine v1.1 449
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVP2_RICCO 0.0
FL-Next: sp=Histone-lysine N-methyltransferase ATX3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: phd finger family protein 0.0
Internal
sp_v1.1_unigene57158 SustainPine v1.1 341
AutoFact: PHD finger family protein 6.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: phd finger family protein 5.58608e-26
Internal
sp_v1.1_unigene59395 SustainPine v1.1 767
AutoFact: PHD multi-domain protein 1.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 3.90184e-38
N-terminus
sp_v1.1_unigene59595 SustainPine v1.1 1467
AutoFact: DNA binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Complete
sp_v1.1_unigene59752 SustainPine v1.1 1009
AutoFact: DNA binding protein, putative 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
C-terminus
sp_v1.1_unigene59992 SustainPine v1.1 1127
AutoFact: DNA binding protein, putative 5.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 6.88038e-43
Putative Complete
sp_v1.1_unigene63171 SustainPine v1.1 339
AutoFact: PHD finger protein-related 9.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v1.1_unigene72471 SustainPine v1.1 264
AutoFact: PRHA; PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A); protein binding / sequence-specific DNA binding / transcription activator/ transcription factor 3.0e-30
FL-Next: sp=Pathogenesis-related homeodomain protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 1.98538e-33
Internal
sp_v1.1_unigene76033 SustainPine v1.1 569
AutoFact: PHD finger family protein n=3 Tax=Arabidopsis RepID=D7LQ37_ARALY 5.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phd finger family protein 2.12288e-20
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain