Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA recognition motif domain, eukaryote

Term: IPR003954  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene889 SustainPine v1.1 2758
AutoFact: polyadenylate-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly binding cytoplasmic 1 0.0
Complete
sp_v1.1_unigene2055 SustainPine v1.1 2415
AutoFact: U2 snRNP auxiliary factor large subunit, putative; K12837 splicing factor U2AF 65 kDa subunit 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene5077 SustainPine v1.1 2530
AutoFact: polyadenylate-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene6201 SustainPine v1.1 2272
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 5.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene14858 SustainPine v1.1 2026
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u2 snrnp auxiliary small 0.0
Complete
sp_v1.1_unigene17592 SustainPine v1.1 1555
AutoFact: polyadenylate-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene19991 SustainPine v1.1 2752
AutoFact: polyadenylate-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene20347 SustainPine v1.1 608
AutoFact: Splicing factor U2AF-associated protein, putative; K13093 HIV Tat-specific factor 1 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene26855 SustainPine v1.1 2361
AutoFact: DUF1777 multi-domain protein 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene31637 SustainPine v1.1 1768
AutoFact: U2 snrnp auxiliary factor, small subunit, putative; K12836 splicing factor U2AF 35 kDa subunit 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u2 snrnp auxiliary small 0.0
Complete
sp_v1.1_unigene35294 SustainPine v1.1 1199
AutoFact: RNA binding protein n=3 Tax=Andropogoneae RepID=B6TN55_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding protein 0.0
Putative C-terminus
sp_v1.1_unigene38211 SustainPine v1.1 945
AutoFact: RNA binding / nucleic acid binding / nucleotide binding 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.05654e-39
Putative Complete
sp_v1.1_unigene65439 SustainPine v1.1 600
AutoFact: DNA-damage repair protein drt111, putative; K12840 splicing factor 45 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain