Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene766 SustainPine v1.1 1304
AutoFact: Ribonucleic acid binding protein S1, putative n=1 Tax=Ricinus communis RepID=B9RI44_RICCO 8.96831e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribonucleic acid binding protein 0.0
Putative Complete
sp_v1.1_unigene889 SustainPine v1.1 2758
AutoFact: polyadenylate-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly binding cytoplasmic 1 0.0
Complete
sp_v1.1_unigene957 SustainPine v1.1 1331
AutoFact: RNA binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene1327 SustainPine v1.1 1866
AutoFact: zinc finger protein, putative; K13095 splicing factor 1 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor-related 0.0
C-terminus
sp_v1.1_unigene1955 SustainPine v1.1 2067
AutoFact: Ribonucleoprotein-like n=2 Tax=Arabidopsis RepID=Q9FM47_ARATH 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif -containing protein 0.0
Putative Complete
sp_v1.1_unigene1989 SustainPine v1.1 598
AutoFact: RRM_1 domain containing protein 5.0e-06
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: hypothetical protein SELMODRAFT_439324 [Selaginella moellendorffii] 1.31557e-26
C-terminus
sp_v1.1_unigene2033 SustainPine v1.1 1084
AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 4.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing 1.33997e-32
C-terminus
sp_v1.1_unigene2055 SustainPine v1.1 2415
AutoFact: U2 snRNP auxiliary factor large subunit, putative; K12837 splicing factor U2AF 65 kDa subunit 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene2614 SustainPine v1.1 335
AutoFact: Splicing factor U2AF-associated protein, putative n=1 Tax=Ricinus communis RepID=B9RH81_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene2682 SustainPine v1.1 963
AutoFact: glycine-rich RNA-binding protein, putative 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene2962 SustainPine v1.1 1400
AutoFact: mRNA splicing factor, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mrna splicing 0.0
N-terminus
sp_v1.1_unigene3133 SustainPine v1.1 3433
AutoFact: RNA-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding region rnp-1 (rna recognition motif) rna recognition motif 2 0.0
Complete
sp_v1.1_unigene3219 SustainPine v1.1 859
AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative; K13155 U11/U12 small nuclear ribonucleoprotein 35 kDa protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 0.0
Putative Complete
sp_v1.1_unigene3408 SustainPine v1.1 1031
AutoFact: RNA binding protein 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene3711 SustainPine v1.1 1257
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene3806 SustainPine v1.1 1534
AutoFact: Os07g0631900 protein n=2 Tax=Oryza sativa RepID=Q8LHN4_ORYSJ 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein cp33 0.0
C-terminus
sp_v1.1_unigene4086 SustainPine v1.1 1920
AutoFact: ribonucleic acid binding protein S1, putative 7.00649e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene4092 SustainPine v1.1 1827
AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene4284 SustainPine v1.1 744
AutoFact: RNA recognition motif (RRM)-containing protein 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 1.62123e-29
Putative N-terminus
sp_v1.1_unigene4619 SustainPine v1.1 638
AutoFact: SR1; SR1; RNA binding / nucleic acid binding / nucleotide binding; K12890 splicing factor, arginine/serine-rich 1/9 3.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 5.83921e-42
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain