Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene7255 SustainPine v1.1 943
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene7524 SustainPine v1.1 844
AutoFact: RNA-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene7683 SustainPine v1.1 1458
AutoFact: RNA-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene7956 SustainPine v1.1 3249
AutoFact: nucleic acid binding protein, putative; K11294 nucleolin 6.00036e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene8302 SustainPine v1.1 2093
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Complete
sp_v1.1_unigene8419 SustainPine v1.1 901
AutoFact: PREDICTED: similar to Os03g0326600 n=1 Tax=Vitis vinifera RepID=UPI000198352E 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 0.0
C-terminus
sp_v1.1_unigene8697 SustainPine v1.1 1225
AutoFact: RNA-binding protein, putative; K13094 RNA-binding protein 5/10 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene8782 SustainPine v1.1 786
AutoFact: ribonucleoprotein, chloroplast, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene8928 SustainPine v1.1 1687
AutoFact: DNAJ heat shock N-terminal domain-containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene9310 SustainPine v1.1 2489
AutoFact: heterogeneous nuclear ribonucleoprotein-like 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene9503 SustainPine v1.1 589
AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 3.48611e-40
N-terminus
sp_v1.1_unigene9765 SustainPine v1.1 1639
AutoFact: RNA-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 0.0
N-terminus
sp_v1.1_unigene9783 SustainPine v1.1 3557
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene9848 SustainPine v1.1 1899
AutoFact: pre-mRNA processing factor [Triticum aestivum] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 7 0.0
Complete
sp_v1.1_unigene9972 SustainPine v1.1 389
AutoFact: nucleic acid binding 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding protein 1.17602e-22
Putative N-terminus
sp_v1.1_unigene10229 SustainPine v1.1 1796
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R9V5_RICCO 8.40779e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.4013e-44
Putative C-terminus
sp_v1.1_unigene10582 SustainPine v1.1 765
AutoFact: splicing factor-related; K13095 splicing factor 1 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.93494e-29
Internal
sp_v1.1_unigene10785 SustainPine v1.1 1413
AutoFact: Flowering time control protein FCA, putative n=1 Tax=Ricinus communis RepID=B9RZT3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fca gamma 0.0
Putative Complete
sp_v1.1_unigene10831 SustainPine v1.1 2448
AutoFact: zf-CCCH domain containing protein 0.0001
FL-Next: Isoform 2 of Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 0.0
Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene10913 SustainPine v1.1 512
AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 9.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 4.38534e-27
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain