Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene315 SustainPine v1.1 1822
• AutoFact: similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zfwd1 (zinc finger wd40 repeat protein 1) nucleic acid binding zinc ion binding 0.0
Complete
sp_v1.1_unigene667 SustainPine v1.1 1851
• AutoFact: CPSF30; CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: c-x8-c-x5-c-x3-h type zn-finger 0.0
Putative N-terminus
sp_v1.1_unigene1141 SustainPine v1.1 2701
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
Complete
sp_v1.1_unigene1325 SustainPine v1.1 3252
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene1359 SustainPine v1.1 1931
• AutoFact: Makorin-1, putative n=1 Tax=Ricinus communis RepID=B9SL96_RICCO 0.0
• FL-Next: sp=E3 ubiquitin-protein ligase makorin; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: ccch-type zinc finger protein c3h69 0.0
Complete
sp_v1.1_unigene1588 SustainPine v1.1 942
• AutoFact: zinc finger protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene2056 SustainPine v1.1 1480
• AutoFact: emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding 5.0e-26
• FL-Next: sp=Zinc finger CCCH domain-containing protein 65; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: low quality protein: zinc finger ccch domain-containing protein 4-like 1.0738e-28
Putative C-terminus
sp_v1.1_unigene2684 SustainPine v1.1 729
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 30; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v1.1_unigene2995 SustainPine v1.1 777
• AutoFact: zinc finger (CCCH-type) family protein 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ccch-type zinc finger protein 4.60281e-38
Internal
sp_v1.1_unigene3227 SustainPine v1.1 761
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RT23_RICCO 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
Internal
sp_v1.1_unigene3667 SustainPine v1.1 1196
• AutoFact: Neogenin_C domain containing protein 3.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: diadenosine tetraphosphate hydrolase hit family-like protein 0.0
Putative Complete
sp_v1.1_unigene5018 SustainPine v1.1 3445
• AutoFact: RNA recognition motif (RRM)-containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene5204 SustainPine v1.1 402
• AutoFact: Zinc finger CCCH domain-containing protein 56 n=3 Tax=Oryza sativa RepID=C3H56_ORYSJ 7.0e-22
• FL-Next: sp=Zinc finger CCCH domain-containing protein 56; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: protein 4.08086e-23
Internal
sp_v1.1_unigene5408 SustainPine v1.1 1740
• AutoFact: Zinc finger CCCH domain-containing protein 18 n=3 Tax=Oryza sativa RepID=C3H18_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: zinc finger (ccch-type) 0.0
Complete
sp_v1.1_unigene6037 SustainPine v1.1 2570
• AutoFact: Zinc finger CCCH domain-containing protein 35 n=2 Tax=Oryza sativa RepID=C3H35_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene6113 SustainPine v1.1 1471
• AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 1.13942e-30
N-terminus
sp_v1.1_unigene6651 SustainPine v1.1 1006
• AutoFact: Unassigned protein 3.0e-06
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v1.1_unigene10242 SustainPine v1.1 775
• AutoFact: similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding 6.00036e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene10831 SustainPine v1.1 2448
• AutoFact: zf-CCCH domain containing protein 0.0001
• FL-Next: Isoform 2 of Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 0.0
• Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene10919 SustainPine v1.1 673
• AutoFact: zinc finger (CCCH-type) family protein [Arabidopsis thaliana] sp|Q9LQM3.1|C3H12_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 12; Short=AtC3H12 gb|AAF81332.1|AC007767_12 Contains similarity to an unknown protein At2g35430 gi|3608145 from 3.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger protein 1.43862e-12
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain