Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Nucleic acid-binding, OB-fold-like

Term: IPR016027  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene104 SustainPine v1.1 1847
• AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
• FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
• Blast2go: dna replication licensing factor mcm4 0.0
Putative N-terminus
sp_v1.1_unigene197 SustainPine v1.1 1474
• AutoFact: single-stranded DNA-binding protein, ssb, putative 0.0
• FL-Next: Isoform 2 of Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 0.0
• Blast2go: single-strand binding protein 0.0
Complete
sp_v1.1_unigene595 SustainPine v1.1 2298
• AutoFact: aspartate-tRNA ligase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: aspartyl-trna aspartate--trna 0.0
Complete
sp_v1.1_unigene720 SustainPine v1.1 1443
• AutoFact: Elongation factor P n=3 Tax=Andropogoneae RepID=B6TAH3_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: translation elongation factor p 0.0
Complete
sp_v1.1_unigene746 SustainPine v1.1 1723
• AutoFact: similar to mRNA capping enzyme family protein; K13917 mRNA-capping enzyme [EC:2.7.7.50 3.1.3.33] 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: mrna capping enzyme family protein 0.0
C-terminus
sp_v1.1_unigene1619 SustainPine v1.1 1046
• AutoFact: replication factor A 1, rfa1, putative; K07466 replication factor A1 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: replication factor a 0.0
Putative C-terminus
sp_v1.1_unigene1809 SustainPine v1.1 1678
• AutoFact: 30S ribosomal protein S1, chloroplastic n=1 Tax=Spinacia oleracea RepID=RR1_SPIOL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribosomal protein s1 0.0
Complete
sp_v1.1_unigene2010 SustainPine v1.1 3198
• AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene2283 SustainPine v1.1 1265
• AutoFact: RPA70B; RPA70B (RPA70-KDA SUBUNIT B); DNA binding / nucleic acid binding 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: replication protein a 70 kda dna-binding subunit 0.0
Putative Complete
sp_v1.1_unigene2631 SustainPine v1.1 1302
• AutoFact: methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] 7.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: methionyl-trna synthetase 0.0
Putative Complete
sp_v1.1_unigene2763 SustainPine v1.1 1967
• AutoFact: asparaginyl-tRNA synthetase (EC:6.1.1.22); K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene3174 SustainPine v1.1 1127
• AutoFact: DNA-directed RNA polymerase III 25 kD polypeptide, putative; K03022 DNA-directed RNA polymerase III subunit C25 [EC:2.7.7.6] 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene3221 SustainPine v1.1 1142
• AutoFact: [S] COG2106 Uncharacterized conserved protein 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene3289 SustainPine v1.1 821
• AutoFact: cl11267_1; LOC100280726; K07466 replication factor A1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: replication protein a 70 kda dna-binding subunit 0.0
Putative Complete
sp_v1.1_unigene3347 SustainPine v1.1 534
• AutoFact: DNA binding / nucleic acid binding / zinc ion binding; K07466 replication factor A1 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: replication protein a 70kda 0.0
Internal
sp_v1.1_unigene3529 SustainPine v1.1 1026
• AutoFact: Unassigned protein
• FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: minichromosome maintenance protein 0.0
N-terminus
sp_v1.1_unigene3715 SustainPine v1.1 2452
• AutoFact: methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene3861 SustainPine v1.1 254
• AutoFact: DNA helicase, TBP-interacting protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TL22_PHYPA 9.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ruvb-like 2 4.5671e-38
Internal
sp_v1.1_unigene4790 SustainPine v1.1 1370
• AutoFact: Replication factor A 1, rfa1, putative n=1 Tax=Ricinus communis RepID=B9RK18_RICCO 0.0
• FL-Next: tr=RPA 70kDa subunit; Pisum sativum (Garden pea). 0.0
• Blast2go: replication factor a 0.0
C-terminus
sp_v1.1_unigene5760 SustainPine v1.1 1788
• AutoFact: DNA-directed RNA polymerase II 19 kDa polypeptide; K03015 DNA-directed RNA polymerase II subunit G 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: rna polymerase ii 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain