Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene104 SustainPine v1.1 1847
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
Blast2go: dna replication licensing factor mcm4 0.0
Putative N-terminus
sp_v1.1_unigene197 SustainPine v1.1 1474
AutoFact: single-stranded DNA-binding protein, ssb, putative 0.0
FL-Next: Isoform 2 of Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 0.0
Blast2go: single-strand binding protein 0.0
Complete
sp_v1.1_unigene595 SustainPine v1.1 2298
AutoFact: aspartate-tRNA ligase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aspartyl-trna aspartate--trna 0.0
Complete
sp_v1.1_unigene720 SustainPine v1.1 1443
AutoFact: Elongation factor P n=3 Tax=Andropogoneae RepID=B6TAH3_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: translation elongation factor p 0.0
Complete
sp_v1.1_unigene746 SustainPine v1.1 1723
AutoFact: similar to mRNA capping enzyme family protein; K13917 mRNA-capping enzyme [EC:2.7.7.50 3.1.3.33] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: mrna capping enzyme family protein 0.0
C-terminus
sp_v1.1_unigene1619 SustainPine v1.1 1046
AutoFact: replication factor A 1, rfa1, putative; K07466 replication factor A1 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: replication factor a 0.0
Putative C-terminus
sp_v1.1_unigene1809 SustainPine v1.1 1678
AutoFact: 30S ribosomal protein S1, chloroplastic n=1 Tax=Spinacia oleracea RepID=RR1_SPIOL 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein s1 0.0
Complete
sp_v1.1_unigene2010 SustainPine v1.1 3198
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene2283 SustainPine v1.1 1265
AutoFact: RPA70B; RPA70B (RPA70-KDA SUBUNIT B); DNA binding / nucleic acid binding 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit 0.0
Putative Complete
sp_v1.1_unigene2631 SustainPine v1.1 1302
AutoFact: methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] 7.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
Putative Complete
sp_v1.1_unigene3289 SustainPine v1.1 821
AutoFact: cl11267_1; LOC100280726; K07466 replication factor A1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit 0.0
Putative Complete
sp_v1.1_unigene3347 SustainPine v1.1 534
AutoFact: DNA binding / nucleic acid binding / zinc ion binding; K07466 replication factor A1 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: replication protein a 70kda 0.0
Internal
sp_v1.1_unigene3529 SustainPine v1.1 1026
AutoFact: Unassigned protein
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: minichromosome maintenance protein 0.0
N-terminus
sp_v1.1_unigene3715 SustainPine v1.1 2452
AutoFact: methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene4790 SustainPine v1.1 1370
AutoFact: Replication factor A 1, rfa1, putative n=1 Tax=Ricinus communis RepID=B9RK18_RICCO 0.0
FL-Next: tr=RPA 70kDa subunit; Pisum sativum (Garden pea). 0.0
Blast2go: replication factor a 0.0
C-terminus
sp_v1.1_unigene5760 SustainPine v1.1 1788
AutoFact: DNA-directed RNA polymerase II 19 kDa polypeptide; K03015 DNA-directed RNA polymerase II subunit G 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: rna polymerase ii 0.0
Complete
sp_v1.1_unigene5878 SustainPine v1.1 3172
AutoFact: methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] 0.0
FL-Next: sp=Probable methionyl-tRNA synthetase; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene6163 SustainPine v1.1 1007
AutoFact: ATG1; ATG1 (ARABIDOPSIS TRANSMEMBRANE PROTEIN G1P-RELATED 1) 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: cytochrome c-type biogenesis protein 0.0
C-terminus
sp_v1.1_unigene6576 SustainPine v1.1 372
AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 4.0e-26
FL-Next: sp=DNA ligase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp dependent dna ligase family protein 3.05092e-26
C-terminus
sp_v1.1_unigene7571 SustainPine v1.1 988
AutoFact: single-stranded DNA-binding protein, ssb, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: single-strand binding protein 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain