Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene25835 SustainPine v1.1 1269
AutoFact: 40S ribosomal protein S11-1 n=12 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s11 0.0
Complete
sp_v1.1_unigene26027 SustainPine v1.1 1187
AutoFact: single-stranded DNA-binding protein, ssb, putative 8.96831e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: single-strand binding protein 0.0
Complete
sp_v1.1_unigene26124 SustainPine v1.1 1359
AutoFact: DNA-binding protein-related 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene26742 SustainPine v1.1 743
AutoFact: Elongation factor P (EF-P) family protein n=2 Tax=Arabidopsis RepID=D7L774_ARALY 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor p (ef-p) family protein 0.0
C-terminus
sp_v1.1_unigene27371 SustainPine v1.1 882
AutoFact: RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-directed rna polymerases and iii kda polypeptide 0.0
Complete
sp_v1.1_unigene27562 SustainPine v1.1 1029
AutoFact: [J] COG0048 Ribosomal protein S12 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s23 0.0
Complete
sp_v1.1_unigene27930 SustainPine v1.1 871
AutoFact: Translation initiation factor n=4 Tax=eudicotyledons RepID=B5M1Y2_RHEAU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene28074 SustainPine v1.1 913
AutoFact: tRNA-binding region domain-containing protein n=2 Tax=Arabidopsis RepID=D7LFT2_ARALY 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
C-terminus
sp_v1.1_unigene28606 SustainPine v1.1 1103
AutoFact: replication factor A 1, rfa1, putative; K07466 replication factor A1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication factor a 0.0
Complete
sp_v1.1_unigene28851 SustainPine v1.1 1308
AutoFact: Initiation factor 5a, putative n=1 Tax=Ricinus communis RepID=B9RCY4_RICCO 0.0
FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: eukaryotic translation initiation factor 5a isoform iv 0.0
Complete
sp_v1.1_unigene29389 SustainPine v1.1 942
AutoFact: OB fold-containing protein, nucleic acid binding 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid- ob-fold-like protein 0.0
Complete
sp_v1.1_unigene30721 SustainPine v1.1 374
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 4.00001e-40
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna helicase 3.97689e-42
Internal
sp_v1.1_unigene31190 SustainPine v1.1 1085
AutoFact: elongation factor P (EF-P) family protein; K02356 elongation factor EF-P 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor p (ef-p) family protein 0.0
Complete
sp_v1.1_unigene32224 SustainPine v1.1 597
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Ricinus communis RepID=B9SBP3_RICCO 5.0e-29
FL-Next: sp=Lysyl-tRNA synthetase; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: lysyl-trna synthetase 1.66966e-29
N-terminus
sp_v1.1_unigene36433 SustainPine v1.1 1216
AutoFact: 60S ribosomal protein L8, putative; K02938 large subunit ribosomal protein L8e 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene39886 SustainPine v1.1 707
AutoFact: DNA replication licensing factor MCM8, putative n=1 Tax=Ricinus communis RepID=B9SGR4_RICCO 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna replication licensing factor 0.0
Internal
sp_v1.1_unigene41127 SustainPine v1.1 531
AutoFact: DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative; K03015 DNA-directed RNA polymerase II subunit G 2.0e-32
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: rna polymerase rpb7 n-terminal domain-containing protein 6.90148e-33
Putative C-terminus
sp_v1.1_unigene42408 SustainPine v1.1 548
AutoFact: Rep-A_N domain containing protein 5.0e-11
FL-Next: tr=RPA 70kDa subunit; Pisum sativum (Garden pea). 0.0
Blast2go: predicted protein [Physcomitrella patens subsp. patens] 1.23518e-11
Putative N-terminus
sp_v1.1_unigene43167 SustainPine v1.1 228
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: unnamed protein product [Vitis vinifera] 5.4253e-15
Internal
sp_v1.1_unigene45300 SustainPine v1.1 131
AutoFact: 30S ribosomal protein S12, chloroplastic n=48 Tax=Euphyllophyta RepID=RR12_PINTH 4.0e-16
FL-Next: sp=30S ribosomal protein S12, chloroplastic; Pinus koraiensis (Korean pine). Plastid; Chloroplast. 0.0
Blast2go: ribosomal protein s12 8.26551e-16
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain