Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Ribonuclease H-like domain

Term: IPR012337  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene38362 SustainPine v1.1 454
AutoFact: 3-5 exonuclease, putative 8.0e-27
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: 3 -5 exonuclease domain-containing protein 1.54868e-30
Internal
sp_v1.1_unigene38419 SustainPine v1.1 956
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
C-terminus
sp_v1.1_unigene38983 SustainPine v1.1 457
AutoFact: Ribonuclease H n=1 Tax=Ferroglobus placidus DSM 10642 RepID=D3S3A7_FERPA 7.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v1.1_unigene39155 SustainPine v1.1 606
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: catalytic region ribonuclease h 2.20818e-32
Putative Complete
sp_v1.1_unigene39338 SustainPine v1.1 520
AutoFact: Unassigned protein
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: protein 5.53585e-29
Internal
sp_v1.1_unigene39339 SustainPine v1.1 422
AutoFact: DUF659 domain containing protein 5.00264e-43
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna binding 1.16364e-33
Internal
sp_v1.1_unigene39702 SustainPine v1.1 679
AutoFact: WRNEXO; WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3'-5' exonuclease/ nucleic acid binding / protein binding 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wrnexo (werner syndrome-like exonuclease) 3 -5 exonuclease nucleic acid binding protein binding 1.52426e-33
Putative N-terminus
sp_v1.1_unigene40812 SustainPine v1.1 604
AutoFact: Copia-type polyprotein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 1.27457e-40
Internal
sp_v1.1_unigene41776 SustainPine v1.1 449
AutoFact: DNA polymerase n=1 Tax=Populus trichocarpa RepID=B9HHA9_POPTR 0.0
FL-Next: sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna polymerase alpha catalytic 0.0
Internal
sp_v1.1_unigene41811 SustainPine v1.1 548
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
sp_v1.1_unigene41854 SustainPine v1.1 599
AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 5.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 9.39603e-22
Putative C-terminus
sp_v1.1_unigene41857 SustainPine v1.1 507
AutoFact: Putative gag-pol polyprotein n=1 Tax=Fragaria x ananassa RepID=C6GFP7_FRAAN 5.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 8.30273e-19
Putative N-terminus
sp_v1.1_unigene42007 SustainPine v1.1 430
AutoFact: 3'-5' exonuclease-related 4.0e-09
FL-Next: sp=Werner Syndrome-like exonuclease; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v1.1_unigene42064 SustainPine v1.1 381
AutoFact: ribonuclease, putative (EC:3.1.13.4) 3.0e-11
FL-Next: sp=Poly(A)-specific ribonuclease PARN; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: poly -specific ribonuclease 1.71986e-29
N-terminus
sp_v1.1_unigene42302 SustainPine v1.1 471
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hypothetical protein VITISV_003626 [Vitis vinifera] 1.79545e-38
N-terminus
sp_v1.1_unigene42594 SustainPine v1.1 652
AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative Complete
sp_v1.1_unigene42916 SustainPine v1.1 461
AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: gag-pol polyprotein 2.14453e-32
Internal
sp_v1.1_unigene44814 SustainPine v1.1 267
AutoFact: Unknown EST 2.0e-28
Putative coding
sp_v1.1_unigene45178 SustainPine v1.1 447
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QTQ7_ORYSJ 6.0e-26
FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon unclassified 1.15988e-25
Internal
sp_v1.1_unigene45781 SustainPine v1.1 446
AutoFact: Copia-type polyprotein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 3.6654e-39
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain