Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Zinc finger, CCHC-type

Term: IPR001878  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene127 SustainPine v1.1 3408
AutoFact: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 5 -3 exoribonuclease 2 0.0
Complete
sp_v1.1_unigene1619 SustainPine v1.1 1046
AutoFact: replication factor A 1, rfa1, putative; K07466 replication factor A1 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: replication factor a 0.0
Putative C-terminus
sp_v1.1_unigene1984 SustainPine v1.1 1011
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_83.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SMR7_VITVI 3.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding protein 5.59106e-38
Complete
sp_v1.1_unigene2387 SustainPine v1.1 966
AutoFact: zinc finger protein, putative; K13095 splicing factor 1 3.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene3190 SustainPine v1.1 1679
AutoFact: Zinc knuckle family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LPE8_ARALY 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc knuckle (cchc-type) family protein 0.0
Complete
sp_v1.1_unigene3711 SustainPine v1.1 1257
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene4288 SustainPine v1.1 1611
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol identical 0.0
Putative N-terminus
sp_v1.1_unigene5184 SustainPine v1.1 1962
AutoFact: MYB transcription factor MYB93 n=2 Tax=Glycine max RepID=Q0PJJ8_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene5503 SustainPine v1.1 2301
AutoFact: dead box ATP-dependent RNA helicase, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna helicase 0.0
C-terminus
sp_v1.1_unigene6633 SustainPine v1.1 910
AutoFact: actin depolymerizing factor, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc knuckle (cchc-type) family protein 0.0
N-terminus
sp_v1.1_unigene7092 SustainPine v1.1 1158
AutoFact: Polyprotein n=1 Tax=Phanerochaete chrysosporium RP-78 RepID=Q45W66_PHACH 8.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.70393e-12
Putative Complete
sp_v1.1_unigene8700 SustainPine v1.1 537
AutoFact: emb1441 (embryo defective 1441); nucleic acid binding / zinc ion binding 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: zinc knuckle family expressed 2.31847e-28
Internal
sp_v1.1_unigene9848 SustainPine v1.1 1899
AutoFact: pre-mRNA processing factor [Triticum aestivum] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 7 0.0
Complete
sp_v1.1_unigene11244 SustainPine v1.1 915
AutoFact: splicing factor-related; K13095 splicing factor 1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene12371 SustainPine v1.1 635
AutoFact: putative Myb-related protein [Oryza sativa Japonica Group] gb|AAP55017.1| ZmMybst1, putative, expressed [Oryza sativa (japonica cultivar-group)] gb|EAZ16977.1| hypothetical protein OsJ_32461 [Oryza sativa Japonica Group] gb|ACF60472.1| myb transcription f 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene12482 SustainPine v1.1 763
AutoFact: zinc finger protein, putative; K13095 splicing factor 1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene14526 SustainPine v1.1 1366
AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: copia-type reverse transcriptase-like protein 7.91321e-23
Internal
sp_v1.1_unigene14821 SustainPine v1.1 1856
AutoFact: ATRZ-1A; RNA binding / nucleotide binding 5.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene15295 SustainPine v1.1 1491
AutoFact: Putative zinc finger protein n=1 Tax=Hyacinthus orientalis RepID=Q6EIC6_HYAOR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cellular nucleic acid binding 0.0
Complete
sp_v1.1_unigene15931 SustainPine v1.1 1333
AutoFact: [OU] COG5082 Arginine methyltransferase-interacting protein, contains RING Zn-finger 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cellular nucleic acid binding 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain