Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: WD40-repeat-containing domain

Term: IPR017986  Help

Source: InterPro from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene54096 SustainPine v1.1 399
• AutoFact: COMPASS component SWD2, putative n=1 Tax=Ricinus communis RepID=B9SXL5_RICCO 3.00018e-42
• FL-Next: tr=COMPASS component SWD2, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: wd repeat 4.97461e-42
Putative N-terminus
sp_v1.1_unigene54281 SustainPine v1.1 503
• AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RVD7_RICCO 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 5.08391e-42
C-terminus
sp_v1.1_unigene54705 SustainPine v1.1 286
• AutoFact: F-box and wd40 domain protein, putative (EC:2.7.11.7) 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: f-box and wd40 domain 2.20892e-32
Internal
sp_v1.1_unigene54910 SustainPine v1.1 408
• AutoFact: WD-repeat protein, putative; K11293 protein HIRA/HIR1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone transcription regulator hira 0.0
Internal
sp_v1.1_unigene56168 SustainPine v1.1 346
• AutoFact: F-box and wd40 domain protein, putative n=1 Tax=Ricinus communis RepID=B9R9H9_RICCO 6.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 1.25829e-29
Internal
sp_v1.1_unigene56731 SustainPine v1.1 505
• AutoFact: F-box and wd40 domain protein, putative (EC:2.7.11.7) 7.0e-32
• FL-Next: sp=Lissencephaly-1 homolog; Phaeodactylum tricornutum (strain CCAP 1055/1). 0.0
• Blast2go: f-box and wd40 domain 4.27523e-36
Internal
sp_v1.1_unigene57521 SustainPine v1.1 630
• AutoFact: F-box and wd40 domain protein, putative (EC:2.7.11.7) 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: f-box and wd40 domain 3.04082e-43
Putative C-terminus
sp_v1.1_unigene57779 SustainPine v1.1 325
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v1.1_unigene58332 SustainPine v1.1 437
• AutoFact: transducin family protein / WD-40 repeat family protein; K11790 denticleless 7.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cell division cycle protein 2.90043e-37
Internal
sp_v1.1_unigene60981 SustainPine v1.1 361
• AutoFact: transducin family protein / WD-40 repeat family protein 3.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: wd-40 repeat protein 1.29193e-36
Internal
sp_v1.1_unigene64094 SustainPine v1.1 352
• AutoFact: [R] COG2319 FOG: WD40 repeat 3.0e-08
• FL-Next: sp=Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
• Blast2go: protein 2.50556e-36
Putative N-terminus
sp_v1.1_unigene64530 SustainPine v1.1 569
• AutoFact: coatomer alpha subunit, putative (EC:2.7.11.7); K05236 coatomer protein complex, subunit alpha (xenin) 4.99997e-41
• FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein 3.72017e-41
N-terminus
sp_v1.1_unigene64992 SustainPine v1.1 857
• AutoFact: Polyadenylation factor subunit, putative (EC:2.3.1.48); K04508 transducin (beta)-like 1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative C-terminus
sp_v1.1_unigene66896 SustainPine v1.1 491
• AutoFact: WD-repeat protein, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: transducin family protein 0.0
Internal
sp_v1.1_unigene68462 SustainPine v1.1 415
• AutoFact: WD-repeat protein, putative (EC:2.3.1.48) 6.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 1.4013e-45
Internal
sp_v1.1_unigene69329 SustainPine v1.1 142
• AutoFact: WD40 domain containing protein 3.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: angio-associated migratory cell 1.8924e-12
Internal
sp_v1.1_unigene72402 SustainPine v1.1 353
• AutoFact: Histone H3 methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTB1_PHYPA 2.0e-14
• FL-Next: tr=Histone H3 methyltransferase complex and RNA cleavage factor II complex, subunit SWD2; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: histone h3 methyltransferase complex and rna cleavage factor ii subunit swd2 3.51951e-14
Putative C-terminus
sp_v1.1_unigene75423 SustainPine v1.1 111
• AutoFact: U3 small nucleolar RNA-associated protein, putative (EC:2.7.11.7) 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v1.1_unigene76312 SustainPine v1.1 601
• AutoFact: coatomer alpha subunit, putative (EC:2.7.11.7); K05236 coatomer protein complex, subunit alpha (xenin) 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: coatomer alpha 0.0
C-terminus
sp_v1.1_unigene77183 SustainPine v1.1 777
• AutoFact: F-box and wd40 domain protein, putative 3.0e-35
• FL-Next: sp=F-box/WD-40 repeat-containing protein At5g21040; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: f-box domain containing protein 3.89141e-42
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain