Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene35612 SustainPine v1.1 1128
AutoFact: U3 small nucleolar RNA-associated protein, putative (EC:2.7.11.7) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene35859 SustainPine v1.1 877
AutoFact: WD-repeat protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene35962 SustainPine v1.1 517
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene36406 SustainPine v1.1 1116
AutoFact: nfc103; MSI type nucleosome/chromatin assembly factor C; K10752 histone-binding protein RBBP4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
C-terminus
sp_v1.1_unigene37402 SustainPine v1.1 571
AutoFact: WD-repeat protein, putative 0.0
FL-Next: tr=WD-repeat protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: guanine nucleotide-binding protein 0.0
Internal
sp_v1.1_unigene38441 SustainPine v1.1 585
AutoFact: Transducin family protein n=1 Tax=Brassica oleracea RepID=B2D2H3_BRAOL 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: transducin family protein wd-40 repeat family protein 4.10626e-17
Putative N-terminus
sp_v1.1_unigene38506 SustainPine v1.1 900
AutoFact: WD and tetratricopeptide repeat protein, putative; K11807 WD and tetratricopeptide repeats protein 1 0.0
FL-Next: sp=E3 ubiquitin-protein ligase COP1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Putative C-terminus
sp_v1.1_unigene38686 SustainPine v1.1 562
AutoFact: Os02g0722800 protein n=2 Tax=Oryza sativa RepID=Q6Z5M6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: transducin wd-40 repeat 0.0
Internal
sp_v1.1_unigene40566 SustainPine v1.1 409
AutoFact: NV11707; similar to neutral sphingomyelinase (n-smase) activation associated factor fan 1.0e-07
FL-Next: sp=Guanine nucleotide-binding protein subunit beta-like protein; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: predicted protein [Physcomitrella patens subsp. patens] 3.23194e-28
Internal
sp_v1.1_unigene44008 SustainPine v1.1 488
AutoFact: WD repeat-containing protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NEQ2_COPC7 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hypothetical protein SCHCODRAFT_237857 [Schizophyllum commune H4-8] 2.26172e-37
Internal
sp_v1.1_unigene44152 SustainPine v1.1 570
AutoFact: Putative cyclophilin (70.8 kD) (Cyp-15) n=1 Tax=Oryza sativa Japonica Group RepID=Q6ZJ10_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene44366 SustainPine v1.1 395
AutoFact: transducin family protein / WD-40 repeat family protein 1.0e-31
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 2.88319e-32
Internal
sp_v1.1_unigene44464 SustainPine v1.1 561
AutoFact: similar to microtubule associated protein Ytm1 0.0
FL-Next: sp=Ribosome biogenesis protein WDR12 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Blast2go: microtubule associated protein 0.0
Internal
sp_v1.1_unigene44702 SustainPine v1.1 366
AutoFact: Cleavage stimulation factor 50 kDa subunit, putative 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: cleavage stimulation factor subunit 1 2.77877e-39
Internal
sp_v1.1_unigene45198 SustainPine v1.1 426
AutoFact: WD-40 repeat family protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd-40 repeat family protein 0.0
Internal
sp_v1.1_unigene45818 SustainPine v1.1 710
AutoFact: WD-repeat protein, putative (EC:2.7.11.7) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v1.1_unigene45925 SustainPine v1.1 616
AutoFact: EMB2757 (EMBRYO DEFECTIVE 2757); nucleotide binding 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene46947 SustainPine v1.1 217
AutoFact: WD-repeat protein, putative 3.0e-14
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 4.47941e-14
Internal
sp_v1.1_unigene47196 SustainPine v1.1 271
AutoFact: transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] 2.0e-05
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v1.1_unigene54096 SustainPine v1.1 399
AutoFact: COMPASS component SWD2, putative n=1 Tax=Ricinus communis RepID=B9SXL5_RICCO 3.00018e-42
FL-Next: tr=COMPASS component SWD2, putative; Ricinus communis (Castor bean). 0.0
Blast2go: wd repeat 4.97461e-42
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain