Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: Helicase, superfamily 1/2, ATP-binding domain

Term: IPR014001  Help

Source: InterPro from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene47 SustainPine v1.1 2545
AutoFact: predicted protein; K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna repair and transcription factor xpb1 0.0
N-terminus
sp_v1.1_unigene397 SustainPine v1.1 1483
AutoFact: PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019843BD 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair helicase 0.0
Internal
sp_v1.1_unigene955 SustainPine v1.1 2418
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8B1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
sp_v1.1_unigene989 SustainPine v1.1 1146
AutoFact: ETL1; ETL1; ATP binding / DNA binding / helicase/ nucleic acid binding 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: snf2 family dna-dependent atpase 0.0
Putative N-terminus
sp_v1.1_unigene1176 SustainPine v1.1 1561
AutoFact: ATP-dependent RNA helicase, putative; K12820 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:3.6.4.13] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v1.1_unigene1579 SustainPine v1.1 1410
AutoFact: Putative chloroplast RNA helicase VDL isoform 1 n=2 Tax=Nicotiana tabacum RepID=Q9FE48_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead box atp-dependent rna 0.0
N-terminus
sp_v1.1_unigene1952 SustainPine v1.1 1069
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swi snf class chromatin remodeling complex protein 0.0
N-terminus
sp_v1.1_unigene1985 SustainPine v1.1 1995
AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SPB9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: superkiller viralicidic activity 2-like 2 0.0
N-terminus
sp_v1.1_unigene2043 SustainPine v1.1 2540
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent rna 0.0
Putative Complete
sp_v1.1_unigene2208 SustainPine v1.1 3484
AutoFact: DEAD box RNA helicase (RH26) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna helicase 0.0
Putative Complete
sp_v1.1_unigene2457 SustainPine v1.1 890
AutoFact: ATP-dependent rRNA helicase RRP3; K01529 [EC:3.6.1.-] 7.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent rrna helicase rrp3 6.48904e-29
Putative N-terminus
sp_v1.1_unigene2510 SustainPine v1.1 1027
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SM71_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead box atp-dependent rna 0.0
Internal
sp_v1.1_unigene2667 SustainPine v1.1 2697
AutoFact: dead box ATP-dependent RNA helicase, putative 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene3436 SustainPine v1.1 1200
AutoFact: DEAD-box protein abstrakt, putative; K13116 ATP-dependent RNA helicase DDX41 [EC:3.6.4.13] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box protein abstrakt 0.0
C-terminus
sp_v1.1_unigene3873 SustainPine v1.1 3647
AutoFact: dead box ATP-dependent RNA helicase, putative; K12614 ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene5503 SustainPine v1.1 2301
AutoFact: dead box ATP-dependent RNA helicase, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna helicase 0.0
C-terminus
sp_v1.1_unigene5612 SustainPine v1.1 331
AutoFact: DEAD/DEAH box helicase, putative 5.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: at3g06980 f17a9_13 2.71021e-35
Internal
sp_v1.1_unigene5661 SustainPine v1.1 1478
AutoFact: dead box ATP-dependent RNA helicase, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene6762 SustainPine v1.1 753
AutoFact: ATP-dependent RNA helicase, putative; K12815 pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [EC:3.6.4.13] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene7492 SustainPine v1.1 1779
AutoFact: dead box ATP-dependent RNA helicase, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna helicase-like protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain