Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: S15/NS1, RNA-binding

Term: IPR009068  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene11829 SustainPine v3.0 437
AutoFact: 40S ribosomal protein S13, putative [Solanum demissum] 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.281e-14
C-terminus
sp_v3.0_unigene18815 SustainPine v3.0 2155
AutoFact: S15/NS1, RNA-binding protein [Arabidopsis thaliana] gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains a Ribosomal Protein S15 PF|00312 domain gb|AAK32782.1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Chromosome undetermined scaffold_108, whole genome shotgun sequence 7.92e-09
Complete
sp_v3.0_unigene21842 SustainPine v3.0 603
AutoFact: 40S ribosomal protein S13 n=4 Tax=Schizosaccharomyces RepID=RS13_SCHPO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.85e-14
Complete
sp_v3.0_unigene24578 SustainPine v3.0 447
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 7.0e-40
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.873e-17
C-terminus
sp_v3.0_unigene27878 SustainPine v3.0 570
AutoFact: 40S ribosomal protein S13-1 n=22 Tax=core eudicotyledons RepID=RS131_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.325e-14
Complete
sp_v3.0_unigene28143 SustainPine v3.0 553
AutoFact: 40S ribosomal protein S13 n=14 Tax=Schizophora RepID=RS13_DROME 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.195e-14
Complete
sp_v3.0_unigene28360 SustainPine v3.0 538
AutoFact: RecName: Full=40S ribosomal protein S13 emb|CAA80974.1| ribosomal protein S13 [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.325e-14
Complete
sp_v3.0_unigene30962 SustainPine v3.0 606
AutoFact: 40S ribosomal protein S13 n=58 Tax=Deuterostomia RepID=RS13_HUMAN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.85e-14
Complete
sp_v3.0_unigene31004 SustainPine v3.0 576
AutoFact: 40S ribosomal protein S13 n=58 Tax=Deuterostomia RepID=RS13_HUMAN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.85e-14
Complete
sp_v3.0_unigene31418 SustainPine v3.0 364
AutoFact: 40S ribosomal protein S13 [Lodderomyces elongisporus NRRL YB-4239] gb|EDK46532.1| 40S ribosomal protein S13 [Lodderomyces elongisporus NRRL YB-4239] 4.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.799e-14
C-terminus
sp_v3.0_unigene31851 SustainPine v3.0 347
AutoFact: S13 n=1 Tax=Suberites domuncula RepID=Q4KTC9_SUBDO 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.195e-14
C-terminus
sp_v3.0_unigene31853 SustainPine v3.0 465
AutoFact: RecName: Full=40S ribosomal protein S13 emb|CAA80974.1| ribosomal protein S13 [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 2.325e-14
Putative Complete
sp_v3.0_unigene35173 SustainPine v3.0 928
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.907e-18
Putative Complete
sp_v3.0_unigene39033 SustainPine v3.0 981
AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus). 0.0
Internal
sp_v3.0_unigene40608 SustainPine v3.0 1303
AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.93e-15
Putative Complete
sp_v3.0_unigene41003 SustainPine v3.0 2588
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Retrotransposon protein, putative, unclassified 6.424e-18
Putative C-terminus
sp_v3.0_unigene50669 SustainPine v3.0 752
AutoFact: RVT_1 domain containing protein 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 5.49e-11
Putative Complete
sp_v3.0_unigene51939 SustainPine v3.0 497
AutoFact: Gypsy/Ty3 element polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C7H8_ARATH 3.0e-31
FL-Next: tr=Gypsy/Ty3 element polyprotein, putative; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.666e-11
Internal
sp_v3.0_unigene51949 SustainPine v3.0 423
AutoFact: 40S ribosomal protein S13-1 n=22 Tax=core eudicotyledons RepID=RS131_ARATH 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S13 1.073e-14
Putative N-terminus
sp_v3.0_unigene52327 SustainPine v3.0 373
AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Pol protein integrase region 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain