| General Information |
| Organism: |
Pinus pinaster |
| Tissue: |
several |
| Description: |
Complete assembly of Pinus pinaster. Include sequences from Biogeco 1 v2.0, Biogeco 2 v2.0, Biogeco 3 v1.0, UAGPF v2.0,UMA v2.0, INIA v2.0
|
| Assembly Statistics |
|
| Number of unigenes: |
210513 |
| Mean contig length: |
495 |
| SNPs statistics |
|
| Tot. SNPs: |
548667 |
| Unigenes with SNPs: |
51971 |
| Mean SNPs per unigene: |
10.5 |
| SSRs statistics |
|
| Tot. SSRs: |
5974 |
| Mean SSRs per unigene: |
1.3 |
| SSRs di-nucl. : |
479 |
| SSRs tri-nucl. : |
3309 |
| SSRs > tri-nucl. : |
2186 |
| Annotations statistics |
|
| Annotated unigenes: |
130944 |
| Descriptions: |
68362 |
| Gos: |
3590 |
| Interpros: |
5484 |
| ECs: |
942 |
| Keggs: |
146 |
|
| Project components |
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|
| Assembly components: |
|
| Unigenes file: |
sustainpine_v3.0_unigenes.fasta |
|
| ACE file: |
sustainpine_v3.0.ace |
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| Download annotations for specified unigenes: |
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| SFFs: |
| File 1: |
HIF1XHV01.sff |
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| File 2: |
HIF1XHV02.sff |
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| File 3: |
HIF1XHV03.sff |
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| File 4: |
HLKU4M001.sff |
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| File 5: |
HLKU4M003.sff |
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| File 6: |
HLKU4M004.sff |
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| File 7: |
HLKU4M002.sff |
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| File 8: |
biogeco1 |
Download(NCBI)
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| File 9: |
biogeco2 |
Download(NCBI)
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| File 10: |
biogeco3 |
Not available
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| File 11: |
inia |
Not available
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| File 12: |
uagpf |
Download(NCBI)
|
| | |
| SeqTrimNext reports: |
| | |
| File 1: |
HIF1XHV01_report.pdf |
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| File 2: |
HIF1XHV02_report.pdf |
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| File 3: |
HIF1XHV03_report.pdf |
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| File 4: |
HLKU4M001_report.pdf |
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| File 5: |
HLKU4M003_report.pdf |
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| File 6: |
HLKU4M004_report.pdf |
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| File 7: |
HLKU4M002_report.pdf |
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| File 8: |
biogeco1_report.pdf |
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| File 9: |
biogeco2_report.pdf |
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| File 10: |
biogeco3_report.pdf |
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| File 11: |
inia_report.pdf |
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| File 12: |
uagpf_report.pdf |
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