Sustainpine_db
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Assembly Name: SustainPine v3.0
General Information
Organism: Pinus pinaster
Tissue: several
Description: Complete assembly of Pinus pinaster. Include sequences from Biogeco 1 v2.0, Biogeco 2 v2.0, Biogeco 3 v1.0, UAGPF v2.0,UMA v2.0, INIA v2.0
Assembly Statistics
Number of unigenes: 210513
Mean contig length: 495
SNPs statistics
Tot. SNPs: 548667
Unigenes with SNPs: 51971
Mean SNPs per unigene: 10.5
SSRs statistics
Tot. SSRs: 5974
Mean SSRs per unigene: 1.3
SSRs di-nucl. : 479
SSRs tri-nucl. : 3309
SSRs > tri-nucl. : 2186
Annotations statistics
Annotated unigenes: 130944
Descriptions: 68362
Gos: 3590
Interpros: 5484
ECs: 942
Keggs: 146
Project components

Assembly components:

Unigenes file: sustainpine_v3.0_unigenes.fasta

ACE file: sustainpine_v3.0.ace


Download annotations for specified unigenes:

Paste your unigenes names list (one unigene per line):
Maximum 10 000 names


Or upload unigenes file with names list (one unigene per line):


SFFs:
File 1: HIF1XHV01.sff

File 2: HIF1XHV02.sff

File 3: HIF1XHV03.sff

File 4: HLKU4M001.sff

File 5: HLKU4M003.sff

File 6: HLKU4M004.sff

File 7: HLKU4M002.sff

File 8: biogeco1 Download(NCBI)

File 9: biogeco2 Download(NCBI)

File 10: biogeco3 Not available

File 11: inia Not available

File 12: uagpf Download(NCBI)


SeqTrimNext reports:

File 1: HIF1XHV01_report.pdf

File 2: HIF1XHV02_report.pdf

File 3: HIF1XHV03_report.pdf

File 4: HLKU4M001_report.pdf

File 5: HLKU4M003_report.pdf

File 6: HLKU4M004_report.pdf

File 7: HLKU4M002_report.pdf

File 8: biogeco1_report.pdf

File 9: biogeco2_report.pdf

File 10: biogeco3_report.pdf

File 11: inia_report.pdf

File 12: uagpf_report.pdf





Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain