Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1

Term: IPR007504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene10474 SustainPine v3.0 326
AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 5.0e-32
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 9.017e-09
Internal
sp_v3.0_unigene22614 SustainPine v3.0 881
AutoFact: GRP multi-domain protein 2.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene39419 SustainPine v3.0 474
AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 7.0e-08
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 1.411e-09
Putative C-terminus
sp_v3.0_unigene40353 SustainPine v3.0 524
AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 0.0
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr8 scaffold_34, whole genome shotgun sequence 0.0
Putative C-terminus
sp_v3.0_unigene73917 SustainPine v3.0 290
AutoFact: Small nucleolar RNP protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NGL5_COPC7 1.0e-22
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 6.913e-09
N-terminus
sp_v3.0_unigene84077 SustainPine v3.0 284
AutoFact: DUF3729 multi-domain protein 1.0e-08
coding
sp_v3.0_unigene86864 SustainPine v3.0 366
AutoFact: TT_ORF1 multi-domain protein 2.0e-05
coding
sp_v3.0_unigene110369 SustainPine v3.0 179
AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 1.0e-13
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 6.229e-09
Internal
sp_v3.0_unigene142008 SustainPine v3.0 359
AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fibrillarin, putative 6.336e-08
Putative N-terminus
sp_v3.0_unigene170036 SustainPine v3.0 237
AutoFact: GRP multi-domain protein 1.0e-10
Sma3: Putative glycine-rich protein 2.016e-08
coding

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain