Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA topoisomerase I, active site

Term: IPR018521  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene9121 SustainPine v3.0 1933
AutoFact: DNA topoisomerase 1 beta [Arabidopsis thaliana] dbj|BAB08548.1| DNA topoisomerase I [Arabidopsis thaliana] dbj|BAE98926.1| DNA topoisomerase I like protein [Arabidopsis thaliana] gb|AED96615.1| DNA topoisomerase 1 beta [Arabidopsis thaliana] 0.0
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 4.127e-25
C-terminus
sp_v3.0_unigene19456 SustainPine v3.0 2550
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TE60_VITVI 1.4013e-45
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene27352 SustainPine v3.0 435
AutoFact: uncharacterized protein [Arabidopsis thaliana] sp|Q67XX3.1|FB252_ARATH RecName: Full=F-box protein At5g06550 dbj|BAD43165.1| putative protein [Arabidopsis thaliana] dbj|BAD44458.1| putative protein [Arabidopsis thaliana] gb|AED91033.1| uncharacterized pro 1.0e-08
FL-Next: sp=F-box protein At1g78280; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene40698 SustainPine v3.0 788
AutoFact: JmjC domain containing protein 1.0e-11
FL-Next: sp=F-box protein At5g06550; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene42528 SustainPine v3.0 474
AutoFact: Unassigned protein
FL-Next: sp=F-box protein At1g78280; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48450 SustainPine v3.0 187
AutoFact: transcription factor jumonji, jmjC domain-containing protein [Dictyostelium discoideum AX4] gb|EAL72353.1| transcription factor jumonji, jmjC domain-containing protein [Dictyostelium discoideum AX4] 1.0e-13
FL-Next: sp=F-box protein At1g78280; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene77106 SustainPine v3.0 208
AutoFact: Topoisomerase I n=1 Tax=Pisum sativum RepID=O24307_PEA 7.0e-26
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 2.348e-21
Putative C-terminus
sp_v3.0_unigene94910 SustainPine v3.0 886
AutoFact: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9SDN5_RICCO 0.0
FL-Next: sp=F-box protein At5g06550; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcription factor jumonji, putative, expressed 1.0e-08
C-terminus
sp_v3.0_unigene105656 SustainPine v3.0 436
AutoFact: transcription factor jumonji, jmjC domain-containing protein [Dictyostelium discoideum AX4] gb|EAL72353.1| transcription factor jumonji, jmjC domain-containing protein [Dictyostelium discoideum AX4] 8.0e-38
FL-Next: sp=F-box protein At1g78280; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene107017 SustainPine v3.0 304
AutoFact: Unassigned protein
FL-Next: sp=F-box protein At1g78280; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene141014 SustainPine v3.0 871
AutoFact: RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I gb|AAB41401.1| topoisomerase I [Daucus carota] 2.0e-39
FL-Next: sp=DNA topoisomerase 1; Daucus carota (Carrot). 0.0
Sma3: Topoisomerase I 2.543e-25
Internal
sp_v3.0_unigene152584 SustainPine v3.0 495
AutoFact: Transcription factor jumonji n=1 Tax=Dictyostelium fasciculatum RepID=F4Q9D3_9MYCE 4.0e-37
FL-Next: sp=F-box protein At1g78280; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene160065 SustainPine v3.0 478
AutoFact: JmjC domain containing protein 5.0e-12
FL-Next: sp=F-box protein At5g06550; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain