Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein L16

Term: IPR000114  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene5650 SustainPine v3.0 2257
AutoFact: putative BRCT domain-containing protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Brca1 associated ring domain, putative 5.669e-09
C-terminus
sp_v3.0_unigene20024 SustainPine v3.0 1063
AutoFact: NADH-ubiquinone oxidoreductase chain 5 n=325 Tax=Magnoliophyta RepID=NU5M_ARATH 0.0
FL-Next: sp=NADH-ubiquinone oxidoreductase chain 5; berteroana). Mitochondrion. 0.0
Sma3: NADH-ubiquinone oxidoreductase chain 5 2.895e-24
Internal
sp_v3.0_unigene21941 SustainPine v3.0 647
AutoFact: Ribosomal protein S3 n=4 Tax=Pinaceae RepID=D2DWH7_9CONI 5.0e-26
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Sma3: Ribosomal protein S3 0.0
Putative N-terminus
sp_v3.0_unigene24712 SustainPine v3.0 530
AutoFact: 50S ribosomal protein L16 n=1 Tax=Opitutus terrae PB90-1 RepID=RL16_OPITP 0.0
FL-Next: sp=50S ribosomal protein L16, chloroplastic; Pinus amamiana. Plastid; Chloroplast. 0.0
Sma3: 50S ribosomal protein L16, chloroplastic 0.0
Putative Complete
sp_v3.0_unigene27436 SustainPine v3.0 450
AutoFact: 50S ribosomal protein L16 n=4 Tax=Flavobacteriales RepID=RL16_FLAJ1 5.0e-34
FL-Next: sp=50S ribosomal protein L16, chloroplastic; Pinus taeda (Loblolly pine). Plastid; Chloroplast. 0.0
Sma3: 50S ribosomal protein L16, chloroplastic 0.0
C-terminus
sp_v3.0_unigene36011 SustainPine v3.0 740
AutoFact: Ribosomal protein S3 (Fragment) n=3 Tax=Pinaceae RepID=D3TIC9_9CONI 9.0e-18
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Sma3: Ribosomal protein S3 0.0
Internal
sp_v3.0_unigene100467 SustainPine v3.0 511
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 2.0e-39
FL-Next: tr=Ribosomal protein S3; Pinus monophylla. Mitochondrion. 0.0
Sma3: Ribosomal protein S3 0.0
Putative C-terminus
sp_v3.0_unigene106203 SustainPine v3.0 195
AutoFact: F21M11.4 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZWC2_ARATH 6.0e-19
FL-Next: sp=Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Brca1 associated ring domain, putative 5.167e-09
Internal
sp_v3.0_unigene124291 SustainPine v3.0 459
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKE6_VITVI 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene161074 SustainPine v3.0 464
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKE6_VITVI 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene162840 SustainPine v3.0 509
AutoFact: 50S ribosomal protein L16 n=3 Tax=Oxalobacteraceae RepID=RL16_HERAR 2.8026e-45
FL-Next: sp=50S ribosomal protein L16, chloroplastic; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
Sma3: 50S ribosomal protein L16, chloroplastic 0.0
N-terminus
sp_v3.0_unigene189341 SustainPine v3.0 377
AutoFact: Ribosomal protein S3 n=4 Tax=Pinaceae RepID=D2DWH7_9CONI 1.0e-05
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Sma3: Ribosomal protein S3 3.125e-39
Internal
sp_v3.0_unigene191498 SustainPine v3.0 509
AutoFact: LSU ribosomal protein L16P n=1 Tax=Fluviicola taffensis DSM 16823 RepID=F2IIR9_FLUTR 0.0
FL-Next: sp=50S ribosomal protein L16, chloroplastic; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
Sma3: 50S ribosomal protein L16, chloroplastic 0.0
N-terminus
sp_v3.0_unigene206307 SustainPine v3.0 896
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 3.0e-39
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Sma3: Ribosomal protein S3 0.0
C-terminus
sp_v3.0_unigene208545 SustainPine v3.0 1074
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 2.0e-33
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Sma3: Ribosomal protein S3 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain