Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA topoisomerase, type IA, central region, subdomain 1

Term: IPR013824  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4673 SustainPine v3.0 2310
AutoFact: E3 ubiquitin-protein ligase CIP8 [Arabidopsis thaliana] sp|Q9SPL2.1|CIP8_ARATH RecName: Full=E3 ubiquitin-protein ligase CIP8; AltName: Full=COP1-interacting protein 8 gb|AAD56636.1|AF162150_1 COP1-interacting protein CIP8 [Arabidopsis thaliana] dbj|BAA97 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6434 SustainPine v3.0 1486
AutoFact: DNA topoisomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SU60_VITVI 0.0
FL-Next: sp=DNA topoisomerase; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
C-terminus
sp_v3.0_unigene14373 SustainPine v3.0 351
AutoFact: DNA topoisomerase, type IA, core n=1 Tax=Arabidopsis thaliana RepID=F4JRX3_ARATH 1.0e-24
FL-Next: sp=DNA topoisomerase; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene14390 SustainPine v3.0 603
AutoFact: DNA topoisomerase n=2 Tax=Vitis vinifera RepID=A5AWM5_VITVI 0.0
FL-Next: sp=DNA topoisomerase; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene34624 SustainPine v3.0 925
AutoFact: DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9RRL8_RICCO 0.0
FL-Next: sp=DNA topoisomerase; Ricinus communis (Castor bean). 0.0
Sma3: Putative DNA topoisomerase III beta 2.836e-08
Internal
sp_v3.0_unigene44621 SustainPine v3.0 208
AutoFact: DNA topoisomerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U3N3_PHYPA 2.0e-24
FL-Next: sp=DNA topoisomerase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Putative DNA topoisomerase III beta 5.331e-09
Internal
sp_v3.0_unigene45833 SustainPine v3.0 237
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene49369 SustainPine v3.0 341
AutoFact: RVT_1 domain containing protein 8.0e-05
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene51050 SustainPine v3.0 403
AutoFact: DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9SPT5_RICCO 4.0e-26
FL-Next: sp=DNA topoisomerase; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene51577 SustainPine v3.0 701
AutoFact: RVT_1 domain containing protein 3.0e-10
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
N-terminus
sp_v3.0_unigene54347 SustainPine v3.0 486
AutoFact: DNA topoisomerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U3N3_PHYPA 0.0
FL-Next: sp=DNA topoisomerase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Putative DNA topoisomerase III beta 9.517e-08
Internal
sp_v3.0_unigene56302 SustainPine v3.0 184
AutoFact: Unassigned protein 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene56877 SustainPine v3.0 262
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 4.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene59594 SustainPine v3.0 359
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene62162 SustainPine v3.0 257
AutoFact: DNA topoisomerase III [Arabidopsis thaliana] dbj|BAA96895.1| DNA topoisomerase III [Arabidopsis thaliana] gb|ACA50279.1| topoisomerase 3 alpha [Arabidopsis thaliana] gb|AED97816.1| DNA topoisomerase III [Arabidopsis thaliana] 8.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene63970 SustainPine v3.0 229
AutoFact: DNA topoisomerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U3N3_PHYPA 3.0e-25
FL-Next: sp=DNA topoisomerase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Putative DNA topoisomerase III beta 1.635e-08
Internal
sp_v3.0_unigene64887 SustainPine v3.0 206
AutoFact: DNA topoisomerase (Fragment) n=1 Tax=Ricinus communis RepID=B9SN22_RICCO 2.0e-18
FL-Next: sp=DNA topoisomerase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene65245 SustainPine v3.0 267
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 4.0e-20
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Integrase 3.664e-09
Putative C-terminus
sp_v3.0_unigene69505 SustainPine v3.0 205
AutoFact: DNA topoisomerase n=1 Tax=Tribolium castaneum RepID=D2A047_TRICA 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene71560 SustainPine v3.0 278
AutoFact: RVT_1 domain containing protein 5.0e-09
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 5.4e-06
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain