Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Extracellular ligand-binding receptor

Term: IPR001828  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene163573 SustainPine v3.0 437
AutoFact: pfam00060, Lig_chan, Ligand-gated ion channel 8.0e-22
FL-Next: sp=Glutamate receptor 2.7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome undetermined scaffold_107, whole genome shotgun sequence 6.902e-29
Internal
sp_v3.0_unigene163697 SustainPine v3.0 310
AutoFact: RVT_2 domain containing protein 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyprotein, putative 1.765e-07
Internal
sp_v3.0_unigene166065 SustainPine v3.0 414
AutoFact: Glutamate receptor (Fragment) n=2 Tax=Populus trichocarpa RepID=B9ILC0_POPTR 5.0e-21
FL-Next: sp=Glutamate receptor 3.2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene166873 SustainPine v3.0 363
AutoFact: Glutamate receptor n=1 Tax=Ricinus communis RepID=B9S3N7_RICCO 3.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutamate-gated kainate-type ion channel receptor subunit GluR5 2.061e-17
N-terminus
sp_v3.0_unigene168013 SustainPine v3.0 206
AutoFact: Glutamate receptor (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H5K3_POPTR 4.0e-21
FL-Next: sp=Glutamate receptor 3.3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Glutamate-gated kainate-type ion channel receptor subunit GluR5 1.042e-16
Internal
sp_v3.0_unigene190939 SustainPine v3.0 365
AutoFact: glutamate receptor, ionotropic kainate 5 precursor-like protein [Oryza sativa Japonica Group] 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutamate receptor 3 plant, putative 1.115e-10
N-terminus
sp_v3.0_unigene194558 SustainPine v3.0 303
AutoFact: RVT_2 domain containing protein 6.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative polyprotein 1.842e-07
N-terminus
sp_v3.0_unigene196385 SustainPine v3.0 623
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10KL1_ORYSJ 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene196875 SustainPine v3.0 321
AutoFact: Glutamate receptor n=1 Tax=Populus trichocarpa RepID=B9HPN5_POPTR 6.0e-20
FL-Next: sp=Glutamate receptor 3.3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Glutamate-gated kainate-type ion channel receptor subunit GluR5 5.517e-38
Internal
sp_v3.0_unigene196956 SustainPine v3.0 561
AutoFact: Glutamate receptor n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S8F0_PHYPA 5.0e-13
FL-Next: Isoform 2 of Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 0.0
N-terminus
sp_v3.0_unigene197264 SustainPine v3.0 252
AutoFact: Polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3X6_SOLDE 8.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 2.425e-08
Internal
sp_v3.0_unigene204073 SustainPine v3.0 366
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.991e-13
C-terminus
sp_v3.0_unigene206584 SustainPine v3.0 515
AutoFact: RVT_2 domain containing protein 8.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.432e-10
Putative C-terminus
sp_v3.0_unigene206845 SustainPine v3.0 631
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 9.705e-11
Putative C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain