Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase III, subunit Rpc25

Term: IPR013238  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4630 SustainPine v3.0 270
AutoFact: S-adenosyl methionine synthetase 2 (Fragment) n=10 Tax=Pinaceae RepID=Q5EK82_PINTA 1.0e-27
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 1.326e-21
Putative C-terminus
sp_v3.0_unigene4705 SustainPine v3.0 1204
AutoFact: S-adenosylmethionine synthase 3 n=6 Tax=Embryophyta RepID=METK3_ARATH 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Methionine S-adenosyl transferase 2.202e-35
C-terminus
sp_v3.0_unigene4912 SustainPine v3.0 1122
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Methionine S-adenosyl transferase 1.285e-35
C-terminus
sp_v3.0_unigene7430 SustainPine v3.0 1183
AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene19303 SustainPine v3.0 478
AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 3.0e-06
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus
sp_v3.0_unigene21639 SustainPine v3.0 1223
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
FL-Next: sp=S-adenosylmethionine synthase 2; Vitis vinifera (Grape). 0.0
Sma3: Methionine S-adenosyl transferase 2.367e-35
Putative Complete
sp_v3.0_unigene21649 SustainPine v3.0 601
AutoFact: S-adenosylmethionine synthase 3 n=6 Tax=Embryophyta RepID=METK3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 2.323e-37
C-terminus
sp_v3.0_unigene51404 SustainPine v3.0 841
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
FL-Next: sp=S-adenosylmethionine synthase 3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 3.752e-31
N-terminus
sp_v3.0_unigene55377 SustainPine v3.0 398
AutoFact: S-adenosylmethionine synthase (Fragment) n=2 Tax=core eudicotyledons RepID=Q42169_ARATH 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 8.33e-32
N-terminus
sp_v3.0_unigene60171 SustainPine v3.0 283
AutoFact: S-adenosylmethionine synthetase (Fragment) n=1 Tax=Dendrobium hybrid cultivar RepID=A4GKJ0_9ASPA 6.0e-33
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Methionine S-adenosyl transferase 2.635e-35
Internal
sp_v3.0_unigene60219 SustainPine v3.0 330
AutoFact: RecName: Full=S-adenosylmethionine synthase 2; Short=AdoMet synthase 2; AltName: Full=Methionine adenosyltransferase 2; Short=MAT 2 gb|AAG17036.1|AF187821_1 S-adenosylmethionine synthetase [Pinus contorta] 7.0e-15
FL-Next: sp=S-adenosylmethionine synthase 3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 1.747e-31
N-terminus
sp_v3.0_unigene62969 SustainPine v3.0 314
AutoFact: ribosomal protein L2 [Glycine max] 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 6.944e-28
Internal
sp_v3.0_unigene63152 SustainPine v3.0 189
AutoFact: S-adenosylmethionine synthase 1 n=24 Tax=Tracheophyta RepID=METK1_VITVI 2.0e-15
FL-Next: sp=S-adenosylmethionine synthase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 2.982e-34
Putative N-terminus
sp_v3.0_unigene63483 SustainPine v3.0 332
AutoFact: S-adenosylmethionine synthase 2 n=1 Tax=Dianthus caryophyllus RepID=METK2_DIACA 1.0e-29
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Methionine S-adenosyl transferase 4.233e-36
Internal
sp_v3.0_unigene65526 SustainPine v3.0 314
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 4.0e-39
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 9.914e-34
N-terminus
sp_v3.0_unigene66179 SustainPine v3.0 197
AutoFact: S-adenosylmethionine synthase 1 n=24 Tax=Tracheophyta RepID=METK1_VITVI 1.0e-18
FL-Next: sp=S-adenosylmethionine synthase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 1.016e-16
Internal
sp_v3.0_unigene76409 SustainPine v3.0 387
AutoFact: S-adenosyl-L-methionine synthetase (Fragment) n=2 Tax=Magnoliophyta RepID=A0SE31_ANNCH 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-adenosylmethionine synthetase 1.17e-29
Internal
sp_v3.0_unigene80175 SustainPine v3.0 235
AutoFact: RecName: Full=S-adenosylmethionine synthase 2; Short=AdoMet synthase 2; AltName: Full=Methionine adenosyltransferase 2; Short=MAT 2 gb|AAG17036.1|AF187821_1 S-adenosylmethionine synthetase [Pinus contorta] 4.0e-34
FL-Next: sp=S-adenosylmethionine synthase; Pinus banksiana (Jack pine) (Pinus divaricata). 0.0
Sma3: S-adenosylmethionine synthetase 1.147e-16
Internal
sp_v3.0_unigene100369 SustainPine v3.0 438
AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 4.0e-12
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus
sp_v3.0_unigene127199 SustainPine v3.0 811
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Methionine S-adenosyl transferase 8.53e-36
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain