Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: FF domain

Term: IPR002713  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene3871 SustainPine v3.0 3218
• AutoFact: transcription elongation regulator 1 [Arabidopsis thaliana] dbj|BAB01298.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76298.1| transcription elongation regulator 1 [Arabidopsis thaliana] 0.0
• FL-Next: sp=Pre-mRNA-processing protein 40C; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene6643 SustainPine v3.0 3171
• AutoFact: pre-mRNA-processing protein 40A [Arabidopsis thaliana] gb|AEE32062.1| pre-mRNA-processing protein 40A [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene8139 SustainPine v3.0 1485
• AutoFact: small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis 5.0e-30
• FL-Next: sp=Small nuclear ribonucleoprotein-associated protein; Vitis vinifera (Grape). 0.0
• Sma3: Putative snRNP protein 7.054e-09
Complete
sp_v3.0_unigene14933 SustainPine v3.0 1338
• AutoFact: Mid1-complementing activity 1 n=2 Tax=Oryza sativa RepID=Q10RJ5_ORYSJ 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Complete
sp_v3.0_unigene37248 SustainPine v3.0 1234
• AutoFact: MIP-T3 multi-domain protein 6.0e-16
coding
sp_v3.0_unigene70265 SustainPine v3.0 369
• AutoFact: pre-mRNA-processing protein 40A [Arabidopsis thaliana] gb|AEE32062.1| pre-mRNA-processing protein 40A [Arabidopsis thaliana] 5.0e-18
• FL-Next: Isoform 2 of Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A 0.0
Internal
sp_v3.0_unigene81502 SustainPine v3.0 116
• AutoFact: pre-mRNA-processing protein 40A [Arabidopsis thaliana] gb|AEE32062.1| pre-mRNA-processing protein 40A [Arabidopsis thaliana] 2.0e-05
• FL-Next: Isoform 2 of Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A 0.0
Internal
sp_v3.0_unigene93598 SustainPine v3.0 1481
• AutoFact: transcription elongation regulator 1 [Arabidopsis thaliana] dbj|BAB01298.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76298.1| transcription elongation regulator 1 [Arabidopsis thaliana] 3.9937e-43
• FL-Next: sp=Pre-mRNA-processing protein 40C; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene93723 SustainPine v3.0 893
• AutoFact: transcription elongation regulator 1 [Arabidopsis thaliana] dbj|BAB01298.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76298.1| transcription elongation regulator 1 [Arabidopsis thaliana] 3.0e-34
• FL-Next: sp=Pre-mRNA-processing protein 40C; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene95079 SustainPine v3.0 764
• AutoFact: transcription elongation regulator 1 [Arabidopsis thaliana] dbj|BAB01298.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76298.1| transcription elongation regulator 1 [Arabidopsis thaliana] 7.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene101594 SustainPine v3.0 593
• AutoFact: PRP38_assoc multi-domain protein 3.0e-08
coding
sp_v3.0_unigene106464 SustainPine v3.0 925
• AutoFact: pre-mRNA-processing protein 40A [Arabidopsis thaliana] gb|AEE32062.1| pre-mRNA-processing protein 40A [Arabidopsis thaliana] 2.0e-39
• FL-Next: Isoform 2 of Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A 0.0
• Sma3: Protein binding protein, putative 8.623e-06
Internal
sp_v3.0_unigene107539 SustainPine v3.0 642
• AutoFact: transcription elongation regulator 1 [Arabidopsis thaliana] dbj|BAB01298.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76298.1| transcription elongation regulator 1 [Arabidopsis thaliana] 5.0e-30
• FL-Next: sp=Pre-mRNA-processing protein 40C; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene161849 SustainPine v3.0 319
• AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6W2_RICCO 6.0e-27
• FL-Next: Isoform 2 of Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A 0.0
• Sma3: Protein binding protein, putative 8.948e-06
Internal
sp_v3.0_unigene176865 SustainPine v3.0 360
• AutoFact: PRP38_assoc multi-domain protein 3.0e-07
coding
sp_v3.0_unigene184665 SustainPine v3.0 313
• AutoFact: transcription elongation regulator 1 [Arabidopsis thaliana] dbj|BAB01298.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76298.1| transcription elongation regulator 1 [Arabidopsis thaliana] 6.0e-18
• FL-Next: sp=Pre-mRNA-processing protein 40C; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Pre-mRNA-processing protein PRP40, putative 4.386e-06
Internal
sp_v3.0_unigene193764 SustainPine v3.0 197
• AutoFact: formin binding protein-like [Arabidopsis thaliana] 2.0e-07
• FL-Next: sp=Pre-mRNA-processing protein 40B; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Protein binding protein, putative 4.24e-06
Internal
sp_v3.0_unigene204675 SustainPine v3.0 548
• AutoFact: WWbp multi-domain protein 2.0e-12
coding
sp_v3.0_unigene210126 SustainPine v3.0 285
• AutoFact: transcription elongation regulator 1 [Arabidopsis thaliana] dbj|BAB01298.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76298.1| transcription elongation regulator 1 [Arabidopsis thaliana] 5.0e-11
• FL-Next: sp=Pre-mRNA-processing protein 40C; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Pre-mRNA-processing protein PRP40, putative 6.823e-06
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain