Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Methyl-CpG DNA binding

Term: IPR001739  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene3141 SustainPine v3.0 1123
• AutoFact: methyl-CPG-binding domain 9 [Arabidopsis thaliana] sp|Q9SGH2.1|MBD9_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 9; Short=AtMBD9; Short=MBD09; AltName: Full=Histone acetyl tranferase MBD9; AltName: Full=Methyl-CpG-binding protein MBD9 5.60519e-45
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene3535 SustainPine v3.0 3375
• AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAK3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Global transcription factor group 7.085e-14
Complete
sp_v3.0_unigene4110 SustainPine v3.0 1952
• AutoFact: methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_974850.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_001190421.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] sp|Q8LA53.1|MBD2_ARATH RecName: Full=M 0.0
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Methyl binding domain protein 4.644e-07
Complete
sp_v3.0_unigene7954 SustainPine v3.0 1155
• AutoFact: methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_974850.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_001190421.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] sp|Q8LA53.1|MBD2_ARATH RecName: Full=M 0.0
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Methyl binding domain protein 2.518e-07
Putative Complete
sp_v3.0_unigene9301 SustainPine v3.0 774
• AutoFact: Nucleosome-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RV64_RICCO 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene9689 SustainPine v3.0 1918
• AutoFact: methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_974850.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_001190421.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] sp|Q8LA53.1|MBD2_ARATH RecName: Full=M 0.0
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Methyl binding domain protein 5.349e-07
Putative Complete
sp_v3.0_unigene10516 SustainPine v3.0 513
• AutoFact: cell division control 6 [Arabidopsis thaliana] emb|CAC59688.1| putative CDC6 [Arabidopsis thaliana] emb|CAC81074.1| CDC6 protein [Arabidopsis thaliana] gb|AEC08293.1| cell division control 6 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Putative cell division control protein 6 2.694e-09
Internal
sp_v3.0_unigene14455 SustainPine v3.0 480
• AutoFact: Methyl-CpG-binding domain-containing protein 9 n=2 Tax=Arabidopsis RepID=MBD9_ARATH 9.99967e-42
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene17418 SustainPine v3.0 830
• AutoFact: Unassigned protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene29661 SustainPine v3.0 1172
• AutoFact: methyl-CPG-binding domain 10 [Arabidopsis thaliana] sp|Q9XI36.1|MBD10_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 10; Short=AtMBD10; Short=MBD10; AltName: Full=Methyl-CpG-binding protein MBD10 gb|AAD39661.1|AC007591_26 ESTs gb|H37032, 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene40703 SustainPine v3.0 515
• AutoFact: Methyl-CpG-binding domain-containing protein 2 n=2 Tax=Arabidopsis RepID=MBD2_ARATH 3.0e-17
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene44658 SustainPine v3.0 827
• AutoFact: methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_974850.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_001190421.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] sp|Q8LA53.1|MBD2_ARATH RecName: Full=M 4.0e-39
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Methyl binding domain protein 1.384e-07
N-terminus
sp_v3.0_unigene53160 SustainPine v3.0 376
• AutoFact: methyl binding domain [Zea mays] gb|AAK40307.1| putative methyl-binding domain protein MBD105 [Zea mays] 3.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Brain acid soluble protein 1 5.965e-09
Putative N-terminus
sp_v3.0_unigene55980 SustainPine v3.0 391
• AutoFact: putative methyl-binding domain (MBD108) protein [Brachypodium sylvaticum] 1.0e-12
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene56202 SustainPine v3.0 404
• AutoFact: Peroxisomal abc transporter, putative n=1 Tax=Ricinus communis RepID=B9RQ07_RICCO 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative ABC transporter 5.385e-06
Putative C-terminus
sp_v3.0_unigene100438 SustainPine v3.0 590
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SH81_RICCO 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene104592 SustainPine v3.0 687
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SH81_RICCO 1.0e-19
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene110161 SustainPine v3.0 351
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SH81_RICCO 1.0e-39
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene122340 SustainPine v3.0 339
• AutoFact: methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_974850.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_001190421.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] sp|Q8LA53.1|MBD2_ARATH RecName: Full=M 3.0e-31
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Methyl binding domain protein 2.179e-07
Internal
sp_v3.0_unigene126880 SustainPine v3.0 645
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3M7_RICCO 2.0e-10
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain