Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Eukaryotic rRNA processing

Term: IPR008610  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene2934 SustainPine v3.0 1616
• AutoFact: putative rRNA-processing protein EBP2-like protein [Arabidopsis thaliana] sp|Q9LUJ5.1|EBP2_ARATH RecName: Full=Probable rRNA-processing protein EBP2 homolog dbj|BAB01241.1| nucleolar protein-like [Arabidopsis thaliana] gb|AAL24270.1| AT3g22660/MWI23_3 [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene4630 SustainPine v3.0 270
• AutoFact: S-adenosyl methionine synthetase 2 (Fragment) n=10 Tax=Pinaceae RepID=Q5EK82_PINTA 1.0e-27
• FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine synthetase 1.326e-21
Putative C-terminus
sp_v3.0_unigene4705 SustainPine v3.0 1204
• AutoFact: S-adenosylmethionine synthase 3 n=6 Tax=Embryophyta RepID=METK3_ARATH 0.0
• FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Methionine S-adenosyl transferase 2.202e-35
C-terminus
sp_v3.0_unigene8003 SustainPine v3.0 1882
• AutoFact: putative rRNA-processing protein EBP2-like protein [Arabidopsis thaliana] sp|Q9LUJ5.1|EBP2_ARATH RecName: Full=Probable rRNA-processing protein EBP2 homolog dbj|BAB01241.1| nucleolar protein-like [Arabidopsis thaliana] gb|AAL24270.1| AT3g22660/MWI23_3 [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene21639 SustainPine v3.0 1223
• AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
• FL-Next: sp=S-adenosylmethionine synthase 2; Vitis vinifera (Grape). 0.0
• Sma3: Methionine S-adenosyl transferase 2.367e-35
Putative Complete
sp_v3.0_unigene21649 SustainPine v3.0 601
• AutoFact: S-adenosylmethionine synthase 3 n=6 Tax=Embryophyta RepID=METK3_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine synthetase 2.323e-37
C-terminus
sp_v3.0_unigene32240 SustainPine v3.0 419
• AutoFact: Ebp2 domain containing protein 3.0e-06
unknown
sp_v3.0_unigene34351 SustainPine v3.0 614
• AutoFact: Probable rRNA-processing protein EBP2 homolog n=2 Tax=Arabidopsis RepID=EBP2_ARATH 9.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene56917 SustainPine v3.0 388
• AutoFact: S-adenosyl methionine synthetase 2 (Fragment) n=10 Tax=Pinaceae RepID=Q5EK82_PINTA 9.0e-26
• FL-Next: sp=S-adenosylmethionine synthase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine synthetase 6.842e-31
C-terminus
sp_v3.0_unigene76031 SustainPine v3.0 229
• AutoFact: S-adenosyl methionine synthetase 2 (Fragment) n=10 Tax=Pinaceae RepID=Q5EK82_PINTA 7.0e-32
• FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine synthetase 4.17e-31
Putative C-terminus
sp_v3.0_unigene140885 SustainPine v3.0 364
• AutoFact: S-adenosylmethionine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TIR8_VITVI 0.0
• FL-Next: sp=S-adenosylmethionine synthase; Pinus pinaster (Maritime pine). 0.0
• Sma3: S-adenosylmethionine synthetase 2.077e-41
Putative C-terminus
sp_v3.0_unigene144903 SustainPine v3.0 267
• AutoFact: Ebp2 domain containing protein 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene145182 SustainPine v3.0 379
• AutoFact: S-adenosyl methionine synthetase 2 (Fragment) n=10 Tax=Pinaceae RepID=Q5EK82_PINTA 1.0e-25
• FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine synthetase 4.63e-31
C-terminus
sp_v3.0_unigene145695 SustainPine v3.0 975
• AutoFact: S-adenosylmethionine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TIR8_VITVI 0.0
• FL-Next: sp=S-adenosylmethionine synthase 2; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
• Sma3: Methionine S-adenosyl transferase 1.44e-35
C-terminus
sp_v3.0_unigene146291 SustainPine v3.0 613
• AutoFact: S-adenosyl methionine synthetase 2 (Fragment) n=10 Tax=Pinaceae RepID=Q5EK82_PINTA 4.0e-28
• FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine synthetase 8.947e-39
C-terminus
sp_v3.0_unigene146442 SustainPine v3.0 494
• AutoFact: S-adenosylmethionine synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJH4_PHYPA 1.99965e-42
• FL-Next: sp=S-adenosylmethionine synthase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine synthetase 4.258e-31
Misassembled
sp_v3.0_unigene146495 SustainPine v3.0 722
• AutoFact: S-adenosylmethionine synthase 1 (Fragment) n=2 Tax=Magnoliophyta RepID=METK1_PETCR 0.0
• FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine synthetase 5.623e-40
C-terminus
sp_v3.0_unigene146876 SustainPine v3.0 942
• AutoFact: S-adenosylmethionine synthase 3 n=6 Tax=Embryophyta RepID=METK3_ARATH 0.0
• FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Methionine S-adenosyl transferase 1.386e-35
C-terminus
sp_v3.0_unigene195089 SustainPine v3.0 954
• AutoFact: S-adenosylmethionine synthase 1 (Fragment) n=2 Tax=Magnoliophyta RepID=METK1_PETCR 0.0
• FL-Next: sp=S-adenosylmethionine synthase 3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine synthetase 8.47601e-40
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain