Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Dicer double-stranded RNA-binding fold

Term: IPR005034  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene66676 SustainPine v3.0 402
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 9.43e-23
Internal
sp_v3.0_unigene67173 SustainPine v3.0 281
AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like 3 9.643e-09
Internal
sp_v3.0_unigene68688 SustainPine v3.0 153
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 8.0e-17
FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75581 SustainPine v3.0 179
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 1.0e-16
FL-Next: sp=Endoribonuclease Dicer homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene76465 SustainPine v3.0 270
AutoFact: Endoribonuclease Dicer homolog 3a n=1 Tax=Oryza sativa Japonica Group RepID=DCL3A_ORYSJ 1.0e-28
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Ribonuclease III, putative 1.236e-07
Internal
sp_v3.0_unigene77354 SustainPine v3.0 296
AutoFact: Unassigned protein
FL-Next: sp=Putative metallophosphoesterase At3g03305; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene78932 SustainPine v3.0 416
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 2.668e-11
Putative N-terminus
sp_v3.0_unigene79163 SustainPine v3.0 299
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 5.637e-35
Internal
sp_v3.0_unigene80303 SustainPine v3.0 175
AutoFact: Endoribonuclease Dicer homolog 2 n=2 Tax=Arabidopsis thaliana RepID=DCL2_ARATH 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 1.464e-13
Internal
sp_v3.0_unigene94123 SustainPine v3.0 845
AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 5.00264e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 3.916e-13
C-terminus
sp_v3.0_unigene99395 SustainPine v3.0 546
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dicer-like protein 4.58e-20
Internal
sp_v3.0_unigene99602 SustainPine v3.0 673
AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 6.474e-10
C-terminus
sp_v3.0_unigene102892 SustainPine v3.0 719
AutoFact: Unassigned protein
FL-Next: sp=Putative metallophosphoesterase At3g03305; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene103424 SustainPine v3.0 304
AutoFact: Isoform 2 of Endoribonuclease Dicer homolog 4 n=1 Tax=Oryza sativa Japonica Group RepID=A7LFZ6-2 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 1.952e-14
Internal
sp_v3.0_unigene104728 SustainPine v3.0 441
AutoFact: protein dicer-like 3 [Arabidopsis thaliana] emb|CAB88120.1| putative protein [Arabidopsis thaliana] gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana] gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana] 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene105016 SustainPine v3.0 507
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 6.0e-31
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
Sma3: Dicer-like 4 1.165e-08
N-terminus
sp_v3.0_unigene106189 SustainPine v3.0 337
AutoFact: Dicer-like protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IKF4_POPTR 2.0e-17
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 0.0
Sma3: Dicer-like 3 7.997e-09
Internal
sp_v3.0_unigene107908 SustainPine v3.0 588
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HHX6_POPTR 4.00001e-40
FL-Next: sp=Endoribonuclease Dicer homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dicer-like protein 3.417e-20
N-terminus
sp_v3.0_unigene108820 SustainPine v3.0 486
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene109933 SustainPine v3.0 449
AutoFact: dicer-like protein 4 [Arabidopsis thaliana] sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4 gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] 1.0e-23
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Dicer-like protein 3.366e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain