Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA mismatch repair protein MutS, N-terminal

Term: IPR016151  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene2557 SustainPine v3.0 1809
• AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
• FL-Next: sp=DNA mismatch repair protein MSH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene3616 SustainPine v3.0 3663
• AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MutS homolog 7 1.575e-08
Putative Complete
sp_v3.0_unigene8359 SustainPine v3.0 1628
• AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
• FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene9781 SustainPine v3.0 1500
• AutoFact: DNA polymerase III subunit epsilon n=3 Tax=Zea mays RepID=B6TZF8_MAIZE 0.0
• FL-Next: tr=DNA polymerase III subunit epsilon; Zea mays (Maize). 0.0
Complete
sp_v3.0_unigene10278 SustainPine v3.0 3906
• AutoFact: DNA mismatch repair protein MSH6-2, putative n=1 Tax=Ricinus communis RepID=B9RKT8_RICCO 0.0
• FL-Next: sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: MutS homolog 7 2.217e-08
Putative Complete
sp_v3.0_unigene22649 SustainPine v3.0 4596
• AutoFact: PREDICTED: similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter n=1 Tax=Vitis vinifera RepID=UPI0001984E30 0.0
• FL-Next: sp=K(+) efflux antiporter 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene42369 SustainPine v3.0 901
• AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
• FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene44245 SustainPine v3.0 809
• AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
• FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene46313 SustainPine v3.0 718
• AutoFact: putative DNA mismatch repair protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA mismatch repair protein MSH3 2.44e-08
Internal
sp_v3.0_unigene46928 SustainPine v3.0 183
• AutoFact: DNA mismatch repair protein n=3 Tax=Arabidopsis RepID=Q84LK0_ARATH 3.0e-14
• FL-Next: sp=DNA mismatch repair protein MSH1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA mismatch repair protein 2.577e-11
Internal
sp_v3.0_unigene48089 SustainPine v3.0 377
• AutoFact: putative DNA mismatch repair protein [Arabidopsis thaliana] 5.0e-40
• FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene50962 SustainPine v3.0 449
• AutoFact: DNA mismatch repair protein [Petunia x hybrida] 2.0e-15
• FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene51695 SustainPine v3.0 1284
• AutoFact: cleavage/polyadenylation specificity factor [Arabidopsis thaliana] dbj|BAC42701.1| unknown protein [Arabidopsis thaliana] gb|AAO63939.1| unknown protein [Arabidopsis thaliana] dbj|BAF00402.1| hypothetical protein [Arabidopsis thaliana] gb|AEE85076.1| clea 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA cleavage factor im, 25kD subunit, putative 2.737e-08
C-terminus
sp_v3.0_unigene57416 SustainPine v3.0 487
• AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 1.0e-33
• FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene58955 SustainPine v3.0 186
• AutoFact: DNA mismatch repair protein [Petunia x hybrida] 3.0e-10
• FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene59542 SustainPine v3.0 266
• AutoFact: DNA mismatch repair protein Msh6-1 n=3 Tax=Arabidopsis RepID=MSH6_ARATH 2.0e-32
• FL-Next: sp=DNA mismatch repair protein MSH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene62281 SustainPine v3.0 250
• AutoFact: MutS_V domain containing protein 1.0e-18
• FL-Next: sp=DNA mismatch repair protein MSH1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA mismatch repair protein 1.767e-22
Internal
sp_v3.0_unigene62823 SustainPine v3.0 212
• AutoFact: Mismatch repair protein (Fragment) n=1 Tax=Solanum lycopersicum RepID=D6QY21_SOLLC 3.0e-26
• FL-Next: sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: MutS homolog 7 1.374e-08
Internal
sp_v3.0_unigene64094 SustainPine v3.0 218
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SQS1_RICCO 3.0e-22
• FL-Next: sp=DNA mismatch repair protein MSH1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA mismatch repair protein 1.552e-22
Internal
sp_v3.0_unigene64754 SustainPine v3.0 170
• AutoFact: putative mismatch binding protein Mus3 [Oryza sativa Japonica Group] dbj|BAD36299.1| putative mismatch binding protein Mus3 [Oryza sativa Japonica Group] 4.0e-26
• FL-Next: sp=DNA mismatch repair protein MSH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain