Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: SWIRM domain

Term: IPR007526  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2286 SustainPine v3.0 1232
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0T3_RICCO 4.0e-32
FL-Next: sp=Dof zinc finger protein DOF2.3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dof zinc finger protein 3.167e-11
Complete
sp_v3.0_unigene2732 SustainPine v3.0 1569
AutoFact: Transcriptional adapter ADA2 n=9 Tax=Poaceae RepID=TADA2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase complex component 2.737e-15
C-terminus
sp_v3.0_unigene3199 SustainPine v3.0 2017
AutoFact: Dof zinc finger protein DOF5.2 [Arabidopsis thaliana] ref|NP_851106.1| Dof zinc finger protein DOF5.2 [Arabidopsis thaliana] sp|Q93ZL5.2|DOF52_ARATH RecName: Full=Dof zinc finger protein DOF5.2; Short=AtDOF5.2 gb|AAU90081.1| At5g39660 [Arabidopsis thalian 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: F-box family protein 3.157e-29
C-terminus
sp_v3.0_unigene3232 SustainPine v3.0 1107
AutoFact: Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ 0.0
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Protein LSD1-LIKE 2 1.869e-08
C-terminus
sp_v3.0_unigene4432 SustainPine v3.0 452
AutoFact: Transcriptional adapter ADA2 n=9 Tax=Poaceae RepID=TADA2_ORYSJ 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase complex component 8.499e-20
Internal
sp_v3.0_unigene4550 SustainPine v3.0 397
AutoFact: putative polyamine oxidase [Oryza sativa Japonica Group] 7.0e-21
FL-Next: tr=Putative uncharacterized protein HDMA905; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene9111 SustainPine v3.0 2325
AutoFact: pfam02701, zf-Dof, Dof domain, zinc finger 5.0e-34
FL-Next: tr=Dof domain zinc finger DNA-binding protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: F-box family protein 1.722e-29
Complete
sp_v3.0_unigene11781 SustainPine v3.0 1430
AutoFact: Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana] emb|CAB87783.1| putative protein [Arabidopsis thaliana] dbj|BAF01166.1| hypothetical protein [Arabidopsis thaliana] gb|AED92035.1| Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana] 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene12248 SustainPine v3.0 1563
AutoFact: putative transcriptional adaptor [Oryza sativa Japonica Group] gb|ABF98901.1| transcriptional adaptor, putative, expressed [Oryza sativa Japonica Group] gb|EEC76186.1| hypothetical protein OsI_13524 [Oryza sativa Indica Group] gb|EEE59936.1| hypothetical 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase complex component 1.369e-19
N-terminus
sp_v3.0_unigene12360 SustainPine v3.0 711
AutoFact: pfam02701, zf-Dof, Dof domain, zinc finger 2.0e-38
FL-Next: tr=Dof domain zinc finger DNA-binding protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: F-box family protein 3.65e-22
Internal
sp_v3.0_unigene13569 SustainPine v3.0 2504
AutoFact: SWI/SNF complex subunit SWI3A [Arabidopsis thaliana] sp|Q8W475.1|SWI3A_ARATH RecName: Full=SWI/SNF complex subunit SWI3A; Short=AtSWI3A; AltName: Full=Transcription regulatory protein SWI3A gb|AAL32872.1| putative SWI/SNF family transcription activator [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene20459 SustainPine v3.0 1650
AutoFact: Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SWIRM domain protein 2.541e-12
N-terminus
sp_v3.0_unigene23404 SustainPine v3.0 2929
AutoFact: flowering locus D [Arabidopsis thaliana] 0.0
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SWIRM domain protein 1.919e-12
Complete
sp_v3.0_unigene27548 SustainPine v3.0 648
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0T3_RICCO 8.0e-32
FL-Next: tr=Dof domain zinc finger DNA-binding protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Dof zinc finger protein 2.847e-26
Putative N-terminus
sp_v3.0_unigene29377 SustainPine v3.0 2867
AutoFact: SWI/SNF complex subunit SWI3C [Arabidopsis thaliana] sp|Q9XI07.1|SWI3C_ARATH RecName: Full=SWI/SNF complex subunit SWI3C; Short=AtSWI3C; AltName: Full=Transcription regulatory protein SWI3C gb|AAD41423.1|AC007727_12 Contains similarity to gb|AF033823 moir 0.0
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Sma3: SWIRM domain containing protein, expressed 2.796e-09
Complete
sp_v3.0_unigene30720 SustainPine v3.0 2523
AutoFact: SWI/SNF complex subunit SWI3B [Arabidopsis thaliana] sp|Q84JG2.1|SWI3B_ARATH RecName: Full=SWI/SNF complex subunit SWI3B; Short=AtSWI3B; AltName: Full=Transcription regulatory protein SWI3B gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis 8.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene34547 SustainPine v3.0 1965
AutoFact: Dof transcription factor n=1 Tax=Pinus pinaster RepID=B0BCH1_PINPS 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dof zinc finger protein 1.387e-28
Complete
sp_v3.0_unigene34723 SustainPine v3.0 851
AutoFact: Unassigned protein 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene37243 SustainPine v3.0 2318
AutoFact: Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene44968 SustainPine v3.0 147
AutoFact: Amine oxidase, putative n=1 Tax=Ricinus communis RepID=B9SUC7_RICCO 4.0e-08
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Protein LSD1-LIKE 3 5.331e-09
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain