Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase Rpb2, domain 5

Term: IPR007647  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene75439 SustainPine v3.0 176
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Berberidopsis corallina RepID=Q1L5Z7_9MAGN 2.0e-17
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.545e-24
Internal
sp_v3.0_unigene76907 SustainPine v3.0 285
• AutoFact: RNA polymerase II second largest subunit (Fragment) n=1 Tax=Teucrium fruticans RepID=Q6Q254_9LAMI 3.0e-39
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 3.49501e-40
Internal
sp_v3.0_unigene78149 SustainPine v3.0 193
• AutoFact: DNA-directed RNA polymerase n=2 Tax=Selaginella moellendorffii RepID=D8T979_SELML 3.0e-22
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: DNA-directed RNA polymerase 1.324e-14
Internal
sp_v3.0_unigene80757 SustainPine v3.0 186
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 3.0e-16
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 4.457e-06
Internal
sp_v3.0_unigene80919 SustainPine v3.0 157
• AutoFact: putative RNA polymerase III [Oryza sativa Japonica Group] 3.0e-13
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: DNA-directed RNA polymerase 6.195e-07
Internal
sp_v3.0_unigene99374 SustainPine v3.0 440
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.16e-06
Internal
sp_v3.0_unigene100218 SustainPine v3.0 317
• AutoFact: DNA-directed RNA polymerase n=4 Tax=Solanaceae RepID=Q1L5Z1_SOLLC 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 2.155e-28
Internal
sp_v3.0_unigene101651 SustainPine v3.0 479
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 6.085e-25
C-terminus
sp_v3.0_unigene107823 SustainPine v3.0 402
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 1.371e-20
Internal
sp_v3.0_unigene112810 SustainPine v3.0 331
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1L6V6_SOLLC 4.0e-27
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 1.476e-08
Internal
sp_v3.0_unigene114970 SustainPine v3.0 626
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene150852 SustainPine v3.0 419
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 8.757e-34
Complete
sp_v3.0_unigene151015 SustainPine v3.0 393
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 1.699e-31
Complete
sp_v3.0_unigene154287 SustainPine v3.0 436
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 3.21e-32
Complete
sp_v3.0_unigene154754 SustainPine v3.0 436
• AutoFact: PREDICTED: DNA-directed RNA polymerase III B-like n=1 Tax=Rattus norvegicus RepID=UPI0001CF3F5E 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 6.549e-30
N-terminus
sp_v3.0_unigene155384 SustainPine v3.0 247
• AutoFact: DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena thermophila] gb|EAR82894.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena thermophila SB210] 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 7.765e-15
Putative N-terminus
sp_v3.0_unigene165202 SustainPine v3.0 160
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 3.0e-18
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: DNA-directed RNA polymerase 7.894e-26
Internal
sp_v3.0_unigene193150 SustainPine v3.0 607
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S2W9_TRIAD 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain