Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding, CRM domain

Term: IPR001890  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene51833 SustainPine v3.0 236
AutoFact: Unassigned protein
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene64716 SustainPine v3.0 239
AutoFact: CRS2-associated factor 2 [Arabidopsis thaliana] sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor gb|AAF79596.1|AC007 8.0e-22
FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 1.336e-12
Internal
sp_v3.0_unigene67460 SustainPine v3.0 322
AutoFact: Unassigned protein
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene68913 SustainPine v3.0 198
AutoFact: CRM family member 2 [Arabidopsis thaliana] gb|AAM97013.1| unknown protein [Arabidopsis thaliana] gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana] gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana] 2.0e-11
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene98459 SustainPine v3.0 560
AutoFact: CRM family member 3A [Arabidopsis thaliana] gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana] 1.0e-39
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene98959 SustainPine v3.0 491
AutoFact: unknow protein [Oryza sativa Japonica Group] gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group] 7.0e-19
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
N-terminus
sp_v3.0_unigene99460 SustainPine v3.0 501
AutoFact: Unassigned protein
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene100244 SustainPine v3.0 861
AutoFact: CRS1_YhbY domain containing protein 4.0e-12
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: CRS2-associated factor 2, mitochondrial 7.652e-09
N-terminus
sp_v3.0_unigene101437 SustainPine v3.0 597
AutoFact: CRS1_YhbY domain containing protein 4.0e-14
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 2.13e-12
C-terminus
sp_v3.0_unigene103109 SustainPine v3.0 542
AutoFact: Unassigned protein
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene103182 SustainPine v3.0 613
AutoFact: group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: CFM6 4.49e-09
Internal
sp_v3.0_unigene105982 SustainPine v3.0 241
AutoFact: CRS2-associated factor 1 [Arabidopsis thaliana] sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAK76556.1| unkn 4.0e-25
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 4.227e-13
Internal
sp_v3.0_unigene106519 SustainPine v3.0 242
AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-26
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Zea mays (Maize). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 7.939e-13
Internal
sp_v3.0_unigene108714 SustainPine v3.0 312
AutoFact: CRS2-associated factor 2, chloroplastic n=2 Tax=Arabidopsis RepID=CAF2P_ARATH 1.0e-38
FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 1.134e-12
Internal
sp_v3.0_unigene113969 SustainPine v3.0 286
AutoFact: RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana] gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana] gb|AAS49116.1| At2g28480 [Arabidopsis thaliana] dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana] gb|AEC08129.1| RNA-b 2.0e-16
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: CFM6 3.223e-09
Internal
sp_v3.0_unigene130124 SustainPine v3.0 537
AutoFact: CRM family member 2 [Arabidopsis thaliana] gb|AAM97013.1| unknown protein [Arabidopsis thaliana] gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana] gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana] 2.99878e-43
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Sma3: Protein CHLOROPLAST RNA SPLICING 1 1.483e-12
Internal
sp_v3.0_unigene130551 SustainPine v3.0 488
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 1.0e-25
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene134049 SustainPine v3.0 286
AutoFact: CRS1_YhbY domain containing protein 3.0e-06
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene136190 SustainPine v3.0 226
AutoFact: CRM family member 2 [Arabidopsis thaliana] gb|AAM97013.1| unknown protein [Arabidopsis thaliana] gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana] gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana] 2.0e-23
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Protein CHLOROPLAST RNA SPLICING 1 1.445e-12
Internal
sp_v3.0_unigene137337 SustainPine v3.0 273
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 1.0e-18
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain