Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Splicing factor motif

Term: IPR003648  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1330 SustainPine v3.0 3282
AutoFact: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis thaliana] sp|O22212.1|PRP4_ARATH RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; AltName: Full=Protein EMBRYO DEFECTIVE 2776 gb|AAB84332.1| putative small nuclear 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene25669 SustainPine v3.0 450
AutoFact: Potassium channel regulatory factor n=1 Tax=Metarhizium anisopliae ARSEF 23 RepID=E9F9J5_METAR 6.99949e-42
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
Sma3: Prp18 domain containing protein 2.304e-09
C-terminus
sp_v3.0_unigene29231 SustainPine v3.0 578
AutoFact: Unassigned protein
coding
sp_v3.0_unigene39067 SustainPine v3.0 2143
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene44862 SustainPine v3.0 458
AutoFact: splicing factor Prp18-like protein [Arabidopsis thaliana] gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gb|AAK25940.1|AF360230_1 u 6.0e-33
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Prp18 domain containing protein 2.953e-09
C-terminus
sp_v3.0_unigene57590 SustainPine v3.0 406
AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene70706 SustainPine v3.0 185
AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 9.0e-18
FL-Next: tr=Potassium channel regulatory factor, putative; Ricinus communis (Castor bean). 0.0
Sma3: Prp18 domain containing protein 9.88e-10
Internal
sp_v3.0_unigene94835 SustainPine v3.0 448
AutoFact: splicing factor Prp18-like protein [Arabidopsis thaliana] gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gb|AAK25940.1|AF360230_1 u 1.0e-34
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Prp18 domain containing protein 2.953e-09
C-terminus
sp_v3.0_unigene95465 SustainPine v3.0 1154
AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Prp18 domain containing protein 1.818e-09
N-terminus
sp_v3.0_unigene103137 SustainPine v3.0 222
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein F8F6_200; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene116057 SustainPine v3.0 245
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative N-terminus
sp_v3.0_unigene127429 SustainPine v3.0 604
AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Prp18 domain containing protein 1.818e-09
Internal
sp_v3.0_unigene138323 SustainPine v3.0 222
AutoFact: putative small nuclear ribonucleoprotein Prp4p [Arabidopsis thaliana] dbj|BAF01385.1| putative U4/U6 small nuclear ribonucleoprotein [Arabidopsis thaliana] 6.0e-07
FL-Next: sp=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene151082 SustainPine v3.0 424
AutoFact: splicing factor Prp18-like protein [Arabidopsis thaliana] gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gb|AAK25940.1|AF360230_1 u 4.0e-25
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Prp18 domain containing protein 2.796e-09
Putative C-terminus
sp_v3.0_unigene161012 SustainPine v3.0 359
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene163771 SustainPine v3.0 431
AutoFact: potassium channel regulatory factor, putative; K12817 pre-mRNA-splicing factor 18 5.0e-11
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Prp18 domain containing protein 1.354e-09
C-terminus
sp_v3.0_unigene164627 SustainPine v3.0 269
AutoFact: splicing factor Prp18-like protein [Arabidopsis thaliana] gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gb|AAK25940.1|AF360230_1 u 1.0e-23
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Prp18 domain containing protein 1.818e-09
Internal
sp_v3.0_unigene188102 SustainPine v3.0 576
AutoFact: splicing factor Prp18-like protein [Arabidopsis thaliana] gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gb|AAK25940.1|AF360230_1 u 1.0e-30
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Prp18 domain containing protein 8.982e-10
N-terminus
sp_v3.0_unigene210505 SustainPine v3.0 397
AutoFact: putative small nuclear ribonucleoprotein Prp4p [Arabidopsis thaliana] dbj|BAF01385.1| putative U4/U6 small nuclear ribonucleoprotein [Arabidopsis thaliana] 6.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain