Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase II, heptapeptide repeat, eukaryotic

Term: IPR000684  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene25123 SustainPine v3.0 787
AutoFact: leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb|AED90413.1| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene26528 SustainPine v3.0 566
AutoFact: DNA-directed RNA polymerase n=117 Tax=Hypocreomycetidae RepID=E9ELZ9_METAR 1.0e-14
Sma3: DNA-directed RNA polymerase 3.893e-19
coding
sp_v3.0_unigene28625 SustainPine v3.0 1427
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM34_MARPO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine-rich repeat receptor-like protein kinase 1.309e-34
C-terminus
sp_v3.0_unigene28886 SustainPine v3.0 449
AutoFact: rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb|AAB60741.1| F21M12.27 gene product [Arabidopsis thaliana] gb|AEE28510.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Lyase, putative 1.344e-27
Putative N-terminus
sp_v3.0_unigene35105 SustainPine v3.0 634
AutoFact: Proline-rich receptor-like protein kinase PERK3 n=3 Tax=Arabidopsis thaliana RepID=PERK3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Receptor serine-threonine protein kinase, putative 1.993e-21
Internal
sp_v3.0_unigene37115 SustainPine v3.0 644
AutoFact: leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] dbj|BAC42504.1| unknown protein [Arabidopsis thaliana] gb|ACN59279.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb|AEE36273.1| leucine-rich repeat protein 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Receptor protein kinase-like 5.366e-08
Putative C-terminus
sp_v3.0_unigene39929 SustainPine v3.0 164
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 1.0e-18
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 3.08e-13
Internal
sp_v3.0_unigene43958 SustainPine v3.0 487
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max RepID=Q99368_SOYBN 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 9.971e-22
Internal
sp_v3.0_unigene44586 SustainPine v3.0 424
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q2TUP3_9CONI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene44642 SustainPine v3.0 312
AutoFact: Herpes_BLLF1 multi-domain protein 2.0e-07
Sma3: DNA-directed RNA polymerase 9.64e-20
coding
sp_v3.0_unigene46806 SustainPine v3.0 165
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 2.0e-15
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 3.813e-08
Internal
sp_v3.0_unigene47915 SustainPine v3.0 1071
AutoFact: FAD-linked oxidoreductase 1 n=1 Tax=Glycine max RepID=Q2PMD5_SOYBN 0.0
FL-Next: sp=Reticuline oxidase; Eschscholzia californica (California poppy). 0.0
Sma3: Reticuline oxidase, putative 9.251e-31
Putative C-terminus
sp_v3.0_unigene55939 SustainPine v3.0 186
AutoFact: DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SDS6_SELML 6.0e-22
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene57245 SustainPine v3.0 129
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 2.0e-08
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 3.347e-27
Internal
sp_v3.0_unigene58858 SustainPine v3.0 316
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 6.0e-35
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.134e-21
Internal
sp_v3.0_unigene63299 SustainPine v3.0 264
AutoFact: putative receptor-like protein kinase 2 [Oryza sativa Japonica Group] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Receptor protein kinase-like 4.93e-12
Internal
sp_v3.0_unigene63585 SustainPine v3.0 209
AutoFact: DNA-directed RNA polymerase (Fragment) n=3 Tax=Gnetopsida RepID=Q2TUN5_EPHVI 2.0e-21
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.449e-23
Internal
sp_v3.0_unigene65135 SustainPine v3.0 272
AutoFact: putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp|C0LGV0.1|Y5487_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At5g48740; Flags: Precursor gb|ACN59385.1| leucine-rich repeat receptor-like 1.0e-18
FL-Next: tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Symbiosis receptor-like kinase 1.076e-14
Internal
sp_v3.0_unigene68281 SustainPine v3.0 198
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 1.0e-20
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 5.553e-12
Internal
sp_v3.0_unigene69536 SustainPine v3.0 184
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 3.0e-20
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 3.761e-22
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain