Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: tRNA-dihydrouridine synthase, conserved site

Term: IPR018517  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1049 SustainPine v3.0 2374
AutoFact: RecName: Full=tRNA-dihydrouridine synthase 3-like; AltName: Full=Zinc finger CCCH domain-containing protein 50; Short=AtC3H50 emb|CAB38623.1| putative protein [Arabidopsis thaliana] emb|CAB80552.1| putative protein [Arabidopsis thaliana] 0.0
FL-Next: sp=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: tRNA-dihydrouridine synthase 3-like 6.743e-09
C-terminus
sp_v3.0_unigene1867 SustainPine v3.0 2649
AutoFact: FMN-linked oxidoreductase-like protein protein n=5 Tax=Arabidopsis RepID=Q8H128_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene6639 SustainPine v3.0 1780
AutoFact: tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana] dbj|BAB10956.1| unnamed protein product [Arabidopsis thaliana] gb|AAK83641.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb|AAM26724.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb|AED98315.1| tRNA-dihy 0.0
FL-Next: tr=Putative uncharacterized protein Sb10g029830; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Complete
sp_v3.0_unigene15791 SustainPine v3.0 436
AutoFact: tRNA-dihydrouridine synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKB4_PHYPA 7.0e-16
FL-Next: sp=tRNA-dihydrouridine synthase; Physcomitrella patens subsp. patens (Moss). 0.0
N-terminus
sp_v3.0_unigene24081 SustainPine v3.0 396
AutoFact: Zinc finger protein n=1 Tax=Ciona intestinalis RepID=Q1RLG4_CIOIN 3.0e-28
FL-Next: sp=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene29031 SustainPine v3.0 772
AutoFact: [J] COG0042 tRNA-dihydrouridine synthase 4.0e-08
FL-Next: tr=AT3G63510 protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene33650 SustainPine v3.0 786
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 4.844e-18
C-terminus
sp_v3.0_unigene33659 SustainPine v3.0 1080
AutoFact: Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB 8.99999e-40
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.805e-12
C-terminus
sp_v3.0_unigene33751 SustainPine v3.0 1131
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.24e-11
Putative C-terminus
sp_v3.0_unigene33950 SustainPine v3.0 1026
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.444e-26
Putative C-terminus
sp_v3.0_unigene35002 SustainPine v3.0 980
AutoFact: tRNA-dihydrouridine synthase n=1 Tax=Ricinus communis RepID=B9SSD6_RICCO 0.0
FL-Next: sp=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene36228 SustainPine v3.0 547
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 8.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.08e-14
Putative C-terminus
sp_v3.0_unigene46789 SustainPine v3.0 329
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Sciadopitys verticillata RepID=Q4JQ38_SCIVE 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.483e-34
Internal
sp_v3.0_unigene47780 SustainPine v3.0 722
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.921e-17
Internal
sp_v3.0_unigene53512 SustainPine v3.0 238
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.433e-23
Internal
sp_v3.0_unigene62605 SustainPine v3.0 290
AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Camponotus floridanus RepID=E2AKP5_9HYME 3.0e-23
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 3.443e-16
Putative C-terminus
sp_v3.0_unigene64358 SustainPine v3.0 139
AutoFact: [J] COG0042 tRNA-dihydrouridine synthase 1.0e-11
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene67147 SustainPine v3.0 300
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.396e-08
Internal
sp_v3.0_unigene75161 SustainPine v3.0 326
AutoFact: Copia-type polyprotein n=1 Tax=Glycine max RepID=C0JJI2_SOYBN 5.0e-27
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Putative pol polyprotein 1.264e-08
Putative C-terminus
sp_v3.0_unigene81158 SustainPine v3.0 165
AutoFact: FMN-linked oxidoreductase-like protein protein n=5 Tax=Arabidopsis RepID=Q8H128_ARATH 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain