Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: XPG N-terminal

Term: IPR006085  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene99122 SustainPine v3.0 256
AutoFact: Tetratricopeptide-like helical [Medicago truncatula] 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.116e-10
Internal
sp_v3.0_unigene103151 SustainPine v3.0 342
AutoFact: DNA repair protein UVH3 [Arabidopsis thaliana] sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog; AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3; Short=AtXPG; AltName: Full=UV hypersensitive protein 3; AltNa 9.0e-37
FL-Next: sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene104547 SustainPine v3.0 198
AutoFact: Exonuclease, putative n=1 Tax=Ricinus communis RepID=B9SU84_RICCO 2.0e-10
FL-Next: tr=Exonuclease, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene106536 SustainPine v3.0 228
AutoFact: exonuclease 1 [Arabidopsis thaliana] gb|AEE31111.1| exonuclease 1 [Arabidopsis thaliana] 3.0e-26
FL-Next: Isoform 2 of Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 0.0
Sma3: Exonuclease 1 1.27e-08
Internal
sp_v3.0_unigene109551 SustainPine v3.0 401
AutoFact: pfam01535, PPR, PPR repeat 3.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 5.226e-21
Internal
sp_v3.0_unigene112336 SustainPine v3.0 273
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 6.664e-16
Internal
sp_v3.0_unigene112515 SustainPine v3.0 217
AutoFact: DNA repair protein UVH3 [Arabidopsis thaliana] sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog; AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3; Short=AtXPG; AltName: Full=UV hypersensitive protein 3; AltNa 3.0e-15
FL-Next: sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene113276 SustainPine v3.0 416
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T4R0_RICCO 4.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 2.11596e-43
Putative Complete
sp_v3.0_unigene113427 SustainPine v3.0 439
AutoFact: Unassigned protein
FL-Next: sp=Flap endonuclease GEN-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene124440 SustainPine v3.0 377
AutoFact: Putative pentatricopeptide repeat protein n=5 Tax=Malvoideae RepID=B2ZAT1_9ROSI 7.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.052e-09
N-terminus
sp_v3.0_unigene124752 SustainPine v3.0 291
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 3.58732e-43
N-terminus
sp_v3.0_unigene126473 SustainPine v3.0 333
AutoFact: 5'-3' exonuclease family protein n=4 Tax=Arabidopsis RepID=Q94A33_ARATH 1.0e-32
FL-Next: sp=Exonuclease 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene129399 SustainPine v3.0 598
AutoFact: Pentatricopeptide repeat protein n=1 Tax=Gossypium hirsutum RepID=D2STE6_GOSHI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 4.395e-22
Internal
sp_v3.0_unigene131176 SustainPine v3.0 329
AutoFact: putative pentatricopeptide repeat protein [Gossypium hirsutum] 5.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide (PPR) repeat-containing protein-like 3.315e-12
Internal
sp_v3.0_unigene137426 SustainPine v3.0 346
AutoFact: PPR multi-domain protein 5.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.257e-15
Internal
sp_v3.0_unigene137502 SustainPine v3.0 289
AutoFact: similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana] 9.0e-24
FL-Next: sp=Flap endonuclease 1; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Flap endonuclease 1a 5.451e-09
Internal
sp_v3.0_unigene137809 SustainPine v3.0 277
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53360, mitochondrial; Flags: Precursor emb|CAB67643.1| putative protein [Arabidopsis thaliana] gb|AEE7 6.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 8.40779e-45
Internal
sp_v3.0_unigene149724 SustainPine v3.0 157
AutoFact: Isoform 2 of Exonuclease 1 n=1 Tax=Arabidopsis thaliana RepID=Q8L6Z7-2 9.0e-08
FL-Next: Isoform 2 of Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 0.0
Internal
sp_v3.0_unigene149983 SustainPine v3.0 300
AutoFact: DNA repair protein UVH3 [Arabidopsis thaliana] sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog; AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3; Short=AtXPG; AltName: Full=UV hypersensitive protein 3; AltNa 1.0e-35
FL-Next: sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene154658 SustainPine v3.0 502
AutoFact: Flap endonuclease 1 n=3 Tax=Clupeocephala RepID=FEN1A_DANRE 0.0
FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Flap endonuclease 1a 6.823e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain