Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Intermediate filament protein, conserved site

Term: IPR018039  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene127568 SustainPine v3.0 963
• AutoFact: galactinol synthase [Brassica napus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
N-terminus
sp_v3.0_unigene127628 SustainPine v3.0 1004
• AutoFact: galactinol synthase [Brassica napus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
N-terminus
sp_v3.0_unigene127672 SustainPine v3.0 660
• AutoFact: Galactinol synthase n=3 Tax=Brassica napus RepID=B6ZBV9_BRANA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
C-terminus
sp_v3.0_unigene127697 SustainPine v3.0 670
• AutoFact: Galactinol synthase n=3 Tax=Brassica napus RepID=B6ZBV9_BRANA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
C-terminus
sp_v3.0_unigene128595 SustainPine v3.0 356
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SRK9_RICCO 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zinc finger protein, putative 2.226e-17
N-terminus
sp_v3.0_unigene129120 SustainPine v3.0 882
• AutoFact: Galactinol synthase n=3 Tax=Brassica napus RepID=B6ZBV9_BRANA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
C-terminus
sp_v3.0_unigene129376 SustainPine v3.0 377
• AutoFact: putative galactinol synthase [Pisum sativum] 8.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
Internal
sp_v3.0_unigene129861 SustainPine v3.0 472
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R8D0_RICCO 5.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr18 scaffold_1, whole genome shotgun sequence 3.095e-13
C-terminus
sp_v3.0_unigene131219 SustainPine v3.0 322
• AutoFact: DEAD-box ATP-dependent RNA helicase 42 n=3 Tax=Arabidopsis RepID=RH42_ARATH 3.0e-28
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 42; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 9.358e-09
Internal
sp_v3.0_unigene132548 SustainPine v3.0 656
• AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.606e-23
N-terminus
sp_v3.0_unigene135681 SustainPine v3.0 433
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAJ6_RICCO 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.633e-09
Putative C-terminus
sp_v3.0_unigene137853 SustainPine v3.0 716
• AutoFact: Galactinol synthase n=2 Tax=Solanoideae RepID=C7G304_SOLLC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
Internal
sp_v3.0_unigene140610 SustainPine v3.0 1198
• AutoFact: putative GDSL-motif lipase/hydrolase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zinc finger protein, putative 2.896e-15
Complete
sp_v3.0_unigene142244 SustainPine v3.0 311
• AutoFact: Chloroa_b-bind domain containing protein 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zinc finger protein, putative 4.113e-23
Internal
sp_v3.0_unigene142309 SustainPine v3.0 726
• AutoFact: putative galactinol synthase [Pisum sativum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
N-terminus
sp_v3.0_unigene144203 SustainPine v3.0 518
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.284e-31
Internal
sp_v3.0_unigene144225 SustainPine v3.0 1167
• AutoFact: Galactinol synthase n=1 Tax=Coptis japonica RepID=B0I373_COPJA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
Complete
sp_v3.0_unigene144579 SustainPine v3.0 270
• AutoFact: galactinol synthase [Brassica napus] 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Galactinol synthase 0.0
Internal
sp_v3.0_unigene144599 SustainPine v3.0 534
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene144637 SustainPine v3.0 395
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Gag-Pol polyprotein 8.165e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain