Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase Rpb2, OB-fold

Term: IPR014724  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene350 SustainPine v3.0 1553
AutoFact: Ribosomal protein L2 n=1 Tax=Cycas taitungensis RepID=B0BLF2_CYCTA 0.0
FL-Next: sp=50S ribosomal protein L2, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
Sma3: Ribosomal protein L2 0.0
Putative Complete
sp_v3.0_unigene605 SustainPine v3.0 2352
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 0.0
FL-Next: sp=Transcription factor bHLH49; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: BHLH transcription factor 8.684e-15
Complete
sp_v3.0_unigene1535 SustainPine v3.0 4578
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV38_VITVI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase 0.0
Complete
sp_v3.0_unigene1907 SustainPine v3.0 1091
AutoFact: Transcription factor bHLH69 n=3 Tax=Arabidopsis RepID=BH069_ARATH 1.0e-21
FL-Next: sp=Transcription factor bHLH69; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: BHLH transcription factor 1.798e-11
C-terminus
sp_v3.0_unigene5452 SustainPine v3.0 1388
AutoFact: transcription factor bHLH66 [Arabidopsis thaliana] sp|Q9ZUG9.1|BH066_ARATH RecName: Full=Transcription factor bHLH66; AltName: Full=Basic helix-loop-helix protein 66; Short=AtbHLH66; Short=bHLH 66; AltName: Full=Transcription factor EN 95; AltName: Full=b 7.00649e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.921e-21
C-terminus
sp_v3.0_unigene6226 SustainPine v3.0 1693
AutoFact: BHLH transcription factor n=1 Tax=Zea mays RepID=B6UBF8_MAIZE 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.789e-17
Putative Complete
sp_v3.0_unigene6614 SustainPine v3.0 1755
AutoFact: Transcription factor bHLH62 n=1 Tax=Arabidopsis thaliana RepID=BH062_ARATH 7.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.22e-14
Complete
sp_v3.0_unigene9138 SustainPine v3.0 3181
AutoFact: Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA 0.0
FL-Next: tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine). 0.0
Sma3: BHLH transcription factor 4.227e-08
Complete
sp_v3.0_unigene9789 SustainPine v3.0 2431
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.373e-17
Complete
sp_v3.0_unigene9836 SustainPine v3.0 4567
AutoFact: DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Complete
sp_v3.0_unigene18042 SustainPine v3.0 906
AutoFact: 60S ribosomal protein n=1 Tax=Ajellomyces capsulatus H88 RepID=F0USJ3_AJEC8 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L8 2.452e-08
Complete
sp_v3.0_unigene21846 SustainPine v3.0 457
AutoFact: 60S ribosomal protein L2 (Fragment) n=1 Tax=Nicotiana tabacum RepID=Q9LLS6_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene22091 SustainPine v3.0 595
AutoFact: Ribosomal protein L2 n=1 Tax=Cycas taitungensis RepID=B0BLF2_CYCTA 3.9937e-43
FL-Next: sp=50S ribosomal protein L2, chloroplastic; Taiwania cryptomerioides. Plastid; Chloroplast. 0.0
Sma3: Ribosomal protein L2 7.498e-31
N-terminus
sp_v3.0_unigene24739 SustainPine v3.0 2236
AutoFact: Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA 0.0
FL-Next: sp=Transcription factor bHLH130; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: BHLH transcription factor 8.787e-13
Complete
sp_v3.0_unigene27194 SustainPine v3.0 705
AutoFact: 50S ribosomal protein L2 n=6 Tax=cellular organisms RepID=RL2_FLAJ1 0.0
FL-Next: sp=30S ribosomal protein S19, chloroplastic; Pinus aristata. Plastid; Chloroplast. 0.0
Sma3: 50S ribosomal protein L2, chloroplastic 0.0
Putative Complete
sp_v3.0_unigene28498 SustainPine v3.0 673
AutoFact: Ribosomal protein L2 n=1 Tax=Cycas taitungensis RepID=B0BLF2_CYCTA 1.0e-11
FL-Next: sp=60S ribosomal protein L2, mitochondrial; Oryza sativa subsp. japonica (Rice). Mitochondrion. 0.0
Sma3: Ribosomal protein L2 7.807e-19
Internal
sp_v3.0_unigene29985 SustainPine v3.0 2518
AutoFact: BHLH transcription factor PTF1-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPZ6_ORYSJ 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor GBOF-1 6.026e-10
Complete
sp_v3.0_unigene31082 SustainPine v3.0 627
AutoFact: 60S ribosomal protein L8, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N4E3_PHYIT 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L8 1.928e-08
C-terminus
sp_v3.0_unigene31265 SustainPine v3.0 509
AutoFact: 60S ribosomal protein L8, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N4E3_PHYIT 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L8 1.701e-08
C-terminus
sp_v3.0_unigene31411 SustainPine v3.0 535
AutoFact: 60S ribosomal protein L8, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N4E3_PHYIT 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L8 7.067e-09
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain